WormBase Tree Display for Gene: WBGene00003091

WBGene00003091 SMap: S_parent: Sequence: Y22F5A
  Identity: Version: 1
    Name: CGC_name: lys-2 Person_evidence: WBPerson168
      Sequence_name: Y22F5A.5
      Molecular_name: Y22F5A.5
        Y22F5A.5.1
        CE16606
      Other_name: CELE_Y22F5A.5 Accession_evidence: NDB BX284605
      Public_name: lys-2
    DB_info: Database: AceView gene 5K760
        WormQTL gene WBGene00003091
        WormFlux gene WBGene00003091
        NDB locus_tag CELE_Y22F5A.5
        Panther gene CAEEL|WormBase=WBGene00003091|UniProtKB=O62416
          family PTHR23208
        NCBI gene 179429
        RefSeq protein NM_073242.7
        SwissProt UniProtAcc O62416
        TREEFAM TREEFAM_ID TF316378
        UniProt_GCRP UniProtAcc O62416
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:30 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: lys
    Allele (19)
    RNASeq_FPKM (74)
    GO_annotation (11)
    Ortholog (31)
    Paralog: WBGene00003090 Caenorhabditis elegans From_analysis: Inparanoid_8
            Panther
            WormBase-Compara
      WBGene00003096 Caenorhabditis elegans From_analysis: Inparanoid_8
            Panther
            WormBase-Compara
      WBGene00003093 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00003099 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00003092 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00003094 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00003095 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00003098 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00003097 Caenorhabditis elegans From_analysis: Inparanoid_8
            Panther
            WormBase-Compara
    Structured_description: Concise_description: lys-2 is one of ten C. elegans lysozyme genes; as such, lys-2 can be predicted to have a role in lysozymal function including immune function. Paper_evidence: WBPaper00005382
          Curator_confirmed: WBPerson324
          Date_last_updated: 23 Sep 2004 00:00:00
      Automated_description: Predicted to enable lysozyme activity. Involved in defense response to Gram-negative bacterium; defense response to Gram-positive bacterium; and innate immune response. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: Y22F5A.5
    Corresponding_transcript: Y22F5A.5.1
    Other_sequence (135)
    Associated_feature: WBsf034362
      WBsf652976
      WBsf652977
      WBsf652978
      WBsf234363
  Experimental_info: RNAi_result: WBRNAi00094558 Inferred_automatically: RNAi_primary
      WBRNAi00075995 Inferred_automatically: RNAi_primary
      WBRNAi00036714 Inferred_automatically: RNAi_primary
      WBRNAi00095408 Inferred_automatically: RNAi_primary
      WBRNAi00055692 Inferred_automatically: RNAi_primary
      WBRNAi00110089 Inferred_automatically: RNAi_primary
      WBRNAi00020123 Inferred_automatically: RNAi_primary
      WBRNAi00095419 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1013427
      Expr1159218
      Expr2013313
      Expr2031544
    Drives_construct: WBCnstr00009963
      WBCnstr00036237
    Construct_product: WBCnstr00009963
      WBCnstr00036237
    Microarray_results (18)
    Expression_cluster (389)
    Interaction (99)
    WBProcess: WBbiopr:00000039
      WBbiopr:00000092
  Map_info: Map: V Position: 2.45157 Error: 0.000856
    Positive: Positive_clone: Y22F5A Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference (24)
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene