WormBase Tree Display for Gene: WBGene00003091

WBGene00003091 SMap: S_parent: Sequence: Y22F5A
  Identity: Version: 1
    Name: CGC_name: lys-2 Person_evidence: WBPerson168
      Sequence_name: Y22F5A.5
      Molecular_name: Y22F5A.5
        Y22F5A.5.1
        CE16606
      Other_name: CELE_Y22F5A.5 Accession_evidence: NDB BX284605
      Public_name: lys-2
    DB_info: Database: AceView gene 5K760
        WormQTL gene WBGene00003091
        WormFlux gene WBGene00003091
        NDB locus_tag CELE_Y22F5A.5
        Panther gene CAEEL|WormBase=WBGene00003091|UniProtKB=O62416
          family PTHR23208
        NCBI gene 179429
        RefSeq protein NM_073242.7
        SwissProt UniProtAcc O62416
        TREEFAM TREEFAM_ID TF316378
        UniProt_GCRP UniProtAcc O62416
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:30 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: lys
    Allele (19)
    RNASeq_FPKM (74)
    GO_annotation (11)
    Ortholog (31)
    Paralog: WBGene00003090 Caenorhabditis elegans From_analysis: Inparanoid_8
            Panther
            WormBase-Compara
      WBGene00003096 Caenorhabditis elegans From_analysis: Inparanoid_8
            Panther
            WormBase-Compara
      WBGene00003093 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00003099 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00003092 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00003094 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00003095 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00003098 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00003097 Caenorhabditis elegans From_analysis: Inparanoid_8
            Panther
            WormBase-Compara
    Structured_description: Concise_description: lys-2 is one of ten C. elegans lysozyme genes; as such, lys-2 can be predicted to have a role in lysozymal function including immune function. Paper_evidence: WBPaper00005382
          Curator_confirmed: WBPerson324
          Date_last_updated: 23 Sep 2004 00:00:00
      Automated_description: Predicted to enable lysozyme activity. Involved in defense response to Gram-negative bacterium; defense response to Gram-positive bacterium; and innate immune response. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: Y22F5A.5
    Corresponding_transcript: Y22F5A.5.1
    Other_sequence (135)
    Associated_feature: WBsf034362
      WBsf652976
      WBsf652977
      WBsf652978
      WBsf234363
  Experimental_info: RNAi_result: WBRNAi00094558 Inferred_automatically: RNAi_primary
      WBRNAi00075995 Inferred_automatically: RNAi_primary
      WBRNAi00036714 Inferred_automatically: RNAi_primary
      WBRNAi00095408 Inferred_automatically: RNAi_primary
      WBRNAi00055692 Inferred_automatically: RNAi_primary
      WBRNAi00110089 Inferred_automatically: RNAi_primary
      WBRNAi00020123 Inferred_automatically: RNAi_primary
      WBRNAi00095419 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1013427
      Expr1159218
      Expr2013313
      Expr2031544
    Drives_construct: WBCnstr00009963
      WBCnstr00036237
    Construct_product: WBCnstr00009963
      WBCnstr00036237
    Microarray_results (18)
    Expression_cluster (389)
    Interaction: WBInteraction000031144
      WBInteraction000133279
      WBInteraction000152095
      WBInteraction000185042
      WBInteraction000204698
      WBInteraction000204868
      WBInteraction000211287
      WBInteraction000223284
      WBInteraction000231116
      WBInteraction000234709
      WBInteraction000252106
      WBInteraction000253634
      WBInteraction000257750
      WBInteraction000258477
      WBInteraction000262484
      WBInteraction000264219
      WBInteraction000265728
      WBInteraction000267758
      WBInteraction000268671
      WBInteraction000281331
      WBInteraction000284918
      WBInteraction000289214
      WBInteraction000291598
      WBInteraction000292914
      WBInteraction000294358
      WBInteraction000298579
      WBInteraction000300606
      WBInteraction000303806
      WBInteraction000313483
      WBInteraction000321466
      WBInteraction000321524
      WBInteraction000321580
      WBInteraction000325224
      WBInteraction000331402
      WBInteraction000336428
      WBInteraction000338855
      WBInteraction000339479
      WBInteraction000343641
      WBInteraction000344370
      WBInteraction000346952
      WBInteraction000358911
      WBInteraction000359376
      WBInteraction000359556
      WBInteraction000374073
      WBInteraction000375174
      WBInteraction000383466
      WBInteraction000385274
      WBInteraction000390307
      WBInteraction000391708
      WBInteraction000392005
      WBInteraction000393209
      WBInteraction000393350
      WBInteraction000398435
      WBInteraction000399162
      WBInteraction000401402
      WBInteraction000401847
      WBInteraction000403650
      WBInteraction000404650
      WBInteraction000407189
      WBInteraction000408273
      WBInteraction000410168
      WBInteraction000413139
      WBInteraction000415227
      WBInteraction000416278
      WBInteraction000419517
      WBInteraction000420049
      WBInteraction000420899
      WBInteraction000424862
      WBInteraction000426014
      WBInteraction000429876
      WBInteraction000435235
      WBInteraction000435255
      WBInteraction000437508
      WBInteraction000440295
      WBInteraction000443261
      WBInteraction000443341
      WBInteraction000444795
      WBInteraction000447543
      WBInteraction000453365
      WBInteraction000457902
      WBInteraction000501651
      WBInteraction000503279
      WBInteraction000505012
      WBInteraction000515508
      WBInteraction000523973
      WBInteraction000525368
      WBInteraction000525369
      WBInteraction000525370
      WBInteraction000537372
      WBInteraction000537373
      WBInteraction000537392
      WBInteraction000537393
      WBInteraction000537394
      WBInteraction000537403
      WBInteraction000537404
      WBInteraction000537406
      WBInteraction000541045
      WBInteraction000548547
      WBInteraction000573276
    WBProcess: WBbiopr:00000039
      WBbiopr:00000092
  Map_info: Map: V Position: 2.45157 Error: 0.000856
    Positive: Positive_clone: Y22F5A Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference (24)
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene