WormBase Tree Display for Gene: WBGene00003091
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WBGene00003091 | SMap | S_parent | Sequence | Y22F5A | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | CGC_name | lys-2 | Person_evidence | WBPerson168 | |||||
Sequence_name | Y22F5A.5 | ||||||||
Molecular_name | Y22F5A.5 | ||||||||
Y22F5A.5.1 | |||||||||
CE16606 | |||||||||
Other_name | CELE_Y22F5A.5 | Accession_evidence | NDB | BX284605 | |||||
Public_name | lys-2 | ||||||||
DB_info | Database | AceView | gene | 5K760 | |||||
WormQTL | gene | WBGene00003091 | |||||||
WormFlux | gene | WBGene00003091 | |||||||
NDB | locus_tag | CELE_Y22F5A.5 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00003091|UniProtKB=O62416 | |||||||
family | PTHR23208 | ||||||||
NCBI | gene | 179429 | |||||||
RefSeq | protein | NM_073242.7 | |||||||
SwissProt | UniProtAcc | O62416 | |||||||
TREEFAM | TREEFAM_ID | TF316378 | |||||||
UniProt_GCRP | UniProtAcc | O62416 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:30 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | lys | ||||||||
Allele | WBVar01041807 | ||||||||
WBVar01041808 | |||||||||
WBVar01041809 | |||||||||
WBVar01041810 | |||||||||
WBVar01041811 | |||||||||
WBVar01041812 | |||||||||
WBVar01041813 | |||||||||
WBVar01500097 | |||||||||
WBVar01500129 | |||||||||
WBVar01499056 | |||||||||
WBVar01461432 | |||||||||
WBVar00251286 | |||||||||
WBVar00468335 | |||||||||
WBVar00468336 | |||||||||
WBVar01499450 | |||||||||
WBVar01499451 | |||||||||
WBVar01864609 | |||||||||
WBVar02136978 | |||||||||
WBVar01499316 | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (11) | |||||||||
Ortholog (31) | |||||||||
Paralog | WBGene00003090 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | |||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00003096 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | ||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00003093 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00003099 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00003092 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00003094 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00003095 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00003098 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00003097 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | ||||||
Panther | |||||||||
WormBase-Compara | |||||||||
Structured_description | Concise_description | lys-2 is one of ten C. elegans lysozyme genes; as such, lys-2 can be predicted to have a role in lysozymal function including immune function. | Paper_evidence | WBPaper00005382 | |||||
Curator_confirmed | WBPerson324 | ||||||||
Date_last_updated | 23 Sep 2004 00:00:00 | ||||||||
Automated_description | Predicted to enable lysozyme activity. Involved in defense response to Gram-negative bacterium; defense response to Gram-positive bacterium; and innate immune response. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | Y22F5A.5 | |||||||
Corresponding_transcript | Y22F5A.5.1 | ||||||||
Other_sequence (135) | |||||||||
Associated_feature | WBsf034362 | ||||||||
WBsf652976 | |||||||||
WBsf652977 | |||||||||
WBsf652978 | |||||||||
WBsf234363 | |||||||||
Experimental_info | RNAi_result | WBRNAi00094558 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00075995 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00036714 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00095408 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00055692 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00110089 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00020123 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00095419 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1013427 | ||||||||
Expr1159218 | |||||||||
Expr2013313 | |||||||||
Expr2031544 | |||||||||
Drives_construct | WBCnstr00009963 | ||||||||
WBCnstr00036237 | |||||||||
Construct_product | WBCnstr00009963 | ||||||||
WBCnstr00036237 | |||||||||
Microarray_results (18) | |||||||||
Expression_cluster (389) | |||||||||
Interaction (99) | |||||||||
WBProcess | WBbiopr:00000039 | ||||||||
WBbiopr:00000092 | |||||||||
Map_info | Map | V | Position | 2.45157 | Error | 0.000856 | |||
Positive | Positive_clone | Y22F5A | Inferred_automatically | From CDS info | |||||
From sequence, transcript, pseudogene data | |||||||||
Pseudo_map_position | |||||||||
Reference (24) | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |