WormBase Tree Display for Gene: WBGene00002064
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| WBGene00002064 | SMap | S_parent | Sequence | T05G5 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | iff-1 | Person_evidence | WBPerson284 | |||||
| Sequence_name | T05G5.10 | ||||||||
| Molecular_name | T05G5.10a | ||||||||
| T05G5.10a.1 | |||||||||
| CE37787 | |||||||||
| T05G5.10b | |||||||||
| CE00503 | |||||||||
| T05G5.10c | |||||||||
| CE46328 | |||||||||
| T05G5.10b.1 | |||||||||
| T05G5.10c.1 | |||||||||
| Other_name | CELE_T05G5.10 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | iff-1 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:26 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | iff | ||||||||
| Allele (19) | |||||||||
| Strain | WBStrain00022686 | ||||||||
| WBStrain00022688 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (24) | |||||||||
| Ortholog (38) | |||||||||
| Paralog | WBGene00002065 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | |||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | iff-1 encodes an eIF-5A homolog that affects fertility and is required for germ cell proliferation and for some P granule components to localize properly; expression is germline specific and mRNA is expressed in the distal region of gonads where germ cells actively proliferate. | Paper_evidence | WBPaper00012310 | |||||
| WBPaper00018717 | |||||||||
| Curator_confirmed | WBPerson48 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable translation elongation factor activity. Involved in gamete generation and protein localization. Predicted to be located in cytoplasm. Expressed in germ line and gonad. Human ortholog(s) of this gene implicated in colorectal cancer. Is an ortholog of human EIF5A (eukaryotic translation initiation factor 5A). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:9256 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:3300) | ||||
| Molecular_info | Corresponding_CDS | T05G5.10a | |||||||
| T05G5.10b | |||||||||
| T05G5.10c | |||||||||
| Corresponding_CDS_history | T05G5.10:wp135 | ||||||||
| Corresponding_transcript | T05G5.10a.1 | ||||||||
| T05G5.10b.1 | |||||||||
| T05G5.10c.1 | |||||||||
| Other_sequence (107) | |||||||||
| Associated_feature | WBsf651400 | ||||||||
| WBsf667319 | |||||||||
| WBsf667320 | |||||||||
| WBsf993786 | |||||||||
| WBsf1015666 | |||||||||
| Experimental_info | RNAi_result (15) | ||||||||
| Expr_pattern | Expr2909 | ||||||||
| Expr2911 | |||||||||
| Expr2912 | |||||||||
| Expr1021225 | |||||||||
| Expr1031217 | |||||||||
| Expr1156177 | |||||||||
| Expr2012691 | |||||||||
| Expr2030927 | |||||||||
| Drives_construct | WBCnstr00036483 | ||||||||
| Construct_product | WBCnstr00036483 | ||||||||
| Regulate_expr_cluster | WBPaper00057288:iff-1(RNAi)_downregulated_transcript | ||||||||
| WBPaper00057288:iff-1(RNAi)_upregulated_protein | |||||||||
| WBPaper00057288:iff-1(RNAi)_upregulated_transcript | |||||||||
| Antibody | WBAntibody00000726 | ||||||||
| Microarray_results (23) | |||||||||
| Expression_cluster (235) | |||||||||
| Interaction (346) | |||||||||
| Map_info | Map | III | Position | 0.949142 | Error | 0.006732 | |||
| Positive | Positive_clone | T05G5 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Mapping_data | Multi_point | 4195 | |||||||
| 4435 | |||||||||
| Pseudo_map_position | |||||||||
| Reference (15) | |||||||||
| Remark | Sequence connection from [Iino Y] | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
