WormBase Tree Display for Gene: WBGene00000465
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| WBGene00000465 | SMap | S_parent | Sequence | C07G2 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | cpg-1 | Paper_evidence | WBPaper00027679 | |||||
| Sequence_name | C07G2.1 | ||||||||
| Molecular_name | C07G2.1a | ||||||||
| C07G2.1a.1 | |||||||||
| CE00665 | |||||||||
| C07G2.1b | |||||||||
| CE33971 | |||||||||
| C07G2.1b.1 | |||||||||
| Other_name | cej-1 | ||||||||
| CELE_C07G2.1 | Accession_evidence | NDB | BX284603 | ||||||
| Public_name | cpg-1 | ||||||||
| DB_info | Database | AceView | gene | 3F579 | |||||
| WormQTL | gene | WBGene00000465 | |||||||
| WormFlux | gene | WBGene00000465 | |||||||
| NDB | locus_tag | CELE_C07G2.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00000465|UniProtKB=Q17802 | |||||||
| family | PTHR23301 | ||||||||
| NCBI | gene | 175586 | |||||||
| RefSeq | protein | NM_001025989.5 | |||||||
| NM_001025988.8 | |||||||||
| SwissProt | UniProtAcc | Q17802 | |||||||
| TREEFAM | TREEFAM_ID | TF316636 | |||||||
| UniProt_GCRP | UniProtAcc | Q17802 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:20 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 16 Jun 2006 15:10:10 | WBPerson2970 | Name_change | Other_name | cpg-1 | ||||
| 3 | 14 Jan 2008 11:23:07 | WBPerson2970 | Name_change | CGC_name | cej-1 -> cpg-1 | ||||
| Other_name | cej-1 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | cpg | ||||||||
| Allele (40) | |||||||||
| Strain | WBStrain00032264 | ||||||||
| WBStrain00032265 | |||||||||
| WBStrain00005743 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (13) | |||||||||
| Ortholog (50) | |||||||||
| Paralog | WBGene00015102 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00019833 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00016534 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00010351 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00021005 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Concise_description | cpg-1 encodes, by alternative splicing, two isoforms of a chondroitin proteoglycan; CPG-1 contains three chitin-binding peritrophin-A domains and two mucin-like regions; CPG-1 is individually dispensable for normal embryonic development; however, CPG-1 and CPG-2 are jointly required for osmotic integrity of early embryos, error-free chromosomal segregation during meiosis, polar body extrusion, association of the sperm pronucleus/centrosome complex (SPCC) with the early embryonic cortex, localization of PAR-2 in early embryos, posterior localization of P granules or PIE-1, and pseudocleavage; CPG-1, like CPG-2, is covalently linked to chondroitin, which itself is required for vulval morphogenesis, polar-body extrusion, and separation of the eggshell from the embryonic plasma membrane; cpg-1 mRNA, like that of cpg-2, is expressed specifically in the adult hermaphrodite germ line and is bound by GLD-1; CPG-1 has five potential chondroitin attachment sites, one of them verified by mass spectrometry, and transgenic CPG-1 synthesized in mammalian cells carries chondroitin sulfate chains; CPG-1's multiple peritrophin-A domains may enable mechanical cross-linking of chitin. | Paper_evidence | WBPaper00004886 | |||||
| WBPaper00005540 | |||||||||
| WBPaper00005654 | |||||||||
| WBPaper00005867 | |||||||||
| WBPaper00015261 | |||||||||
| WBPaper00027679 | |||||||||
| WBPaper00028588 | |||||||||
| WBPaper00029231 | |||||||||
| WBPaper00029232 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 09 Apr 2007 00:00:00 | ||||||||
| Automated_description | Enables chitin binding activity. Involved in several processes, including eggshell formation; mitotic cytokinesis; and regulation of cytokinesis. Located in external encapsulating structure. Expressed in eggshell; germ line; and oocyte. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C07G2.1a | |||||||
| C07G2.1b | |||||||||
| Corresponding_transcript | C07G2.1a.1 | ||||||||
| C07G2.1b.1 | |||||||||
| Other_sequence (49) | |||||||||
| Associated_feature | WBsf019203 | ||||||||
| WBsf645094 | |||||||||
| WBsf976109 | |||||||||
| WBsf976110 | |||||||||
| WBsf992144 | |||||||||
| WBsf992145 | |||||||||
| WBsf1014761 | |||||||||
| WBsf1014762 | |||||||||
| WBsf224744 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00078684 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00040019 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00000152 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00022636 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00092482 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00007842 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00005076 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00028645 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00010402 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00092494 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr2109 | ||||||||
| Expr4104 | |||||||||
| Expr13068 | |||||||||
| Expr13388 | |||||||||
| Expr1023887 | |||||||||
| Expr1030269 | |||||||||
| Expr1144095 | |||||||||
| Expr2010482 | |||||||||
| Expr2028722 | |||||||||
| Drives_construct | WBCnstr00015402 | ||||||||
| WBCnstr00037990 | |||||||||
| Construct_product | WBCnstr00015402 | ||||||||
| WBCnstr00037990 | |||||||||
| Microarray_results (31) | |||||||||
| Expression_cluster (269) | |||||||||
| Interaction (213) | |||||||||
| Map_info | Map | III | Position | -3.15507 | Error | 0.001827 | |||
| Positive | Positive_clone | C07G2 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference (19) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
