WormBase Tree Display for Gene: WBGene00010351
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| WBGene00010351 | SMap | S_parent | Sequence | H02I12 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | cbd-1 | Person_evidence | WBPerson1822 | |||||
| Sequence_name | H02I12.1 | ||||||||
| Molecular_name | H02I12.1 | ||||||||
| H02I12.1.1 | |||||||||
| CE37527 | |||||||||
| Other_name | CELE_H02I12.1 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | cbd-1 | ||||||||
| DB_info | Database | AceView | gene | 4M141 | |||||
| WormQTL | gene | WBGene00010351 | |||||||
| WormFlux | gene | WBGene00010351 | |||||||
| NDB | locus_tag | CELE_H02I12.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00010351|UniProtKB=O45599 | |||||||
| family | PTHR23301 | ||||||||
| NCBI | gene | 178061 | |||||||
| RefSeq | protein | NM_069744.8 | |||||||
| SwissProt | UniProtAcc | O45599 | |||||||
| TREEFAM | TREEFAM_ID | TF316636 | |||||||
| UniProt_GCRP | UniProtAcc | O45599 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:51 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 20 Jun 2008 11:28:19 | WBPerson2970 | Name_change | CGC_name | cbd-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | cbd | ||||||||
| Allele (70) | |||||||||
| Strain | WBStrain00001924 | ||||||||
| WBStrain00037208 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00034833 | ||||||||
| 00034834 | |||||||||
| 00034835 | |||||||||
| 00034836 | |||||||||
| 00034837 | |||||||||
| 00034838 | |||||||||
| 00034839 | |||||||||
| 00034840 | |||||||||
| 00117784 | |||||||||
| 00117785 | |||||||||
| Ortholog (46) | |||||||||
| Paralog | WBGene00000465 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00015102 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00019833 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00016534 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00021005 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Concise_description | cbd-1 encodes a large (1319-residue) protein with 12 chitin-binding peritrophin-A domains; cbd-1(RNAi) animals have an osmotically-sensitive embryonic lethal phenotype due to defects in eggshell synthesis; CBD-1's multiple peritrophin-A domains might enable mechanical cross-linking of chitin; the N-terminal region of CBD-1 forms a complex with PERM-2 and PERM-4 to promote structural integrity of the outer vitelline layer of the eggshell; other regions of CBD-1 interact with EGG-1/2 and CHS-1 to promote assembly of a functionally distinct complex involved in fertilization and the oocyte-to-embryo transition. | Paper_evidence | WBPaper00025054 | |||||
| WBPaper00028588 | |||||||||
| WBPaper00029231 | |||||||||
| WBPaper00029232 | |||||||||
| WBPaper00055058 | |||||||||
| Person_evidence | WBPerson2357 | ||||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson567 | |||||||||
| Date_last_updated | 10 Oct 2018 00:00:00 | ||||||||
| Automated_description | Predicted to enable chitin binding activity. Involved in eggshell formation; positive regulation of protein localization to cell cortex; and positive regulation of protein localization to plasma membrane. Located in cell periphery. Expressed in germ line and oocyte. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | H02I12.1 | |||||||
| Corresponding_CDS_history | H02I12.1:wp132 | ||||||||
| Corresponding_transcript | H02I12.1.1 | ||||||||
| Other_sequence (30) | |||||||||
| Associated_feature (16) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00103413 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00007576 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00025783 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00085382 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00022672 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00049261 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00071467 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00008914 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Chronogram245 | ||||||||
| Expr13857 | |||||||||
| Expr13860 | |||||||||
| Expr15012 | |||||||||
| Expr1022872 | |||||||||
| Expr1034519 | |||||||||
| Expr1153004 | |||||||||
| Expr2009738 | |||||||||
| Expr2027978 | |||||||||
| Drives_construct | WBCnstr00002712 | ||||||||
| WBCnstr00019828 | |||||||||
| WBCnstr00031480 | |||||||||
| WBCnstr00040212 | |||||||||
| Construct_product | WBCnstr00019828 | ||||||||
| WBCnstr00031480 | |||||||||
| WBCnstr00040212 | |||||||||
| Microarray_results (21) | |||||||||
| Expression_cluster (287) | |||||||||
| Interaction (306) | |||||||||
| Map_info | Map | IV | Position | 4.96662 | Error | 0.001078 | |||
| Positive | Positive_clone | H02I12 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00011961 | ||||||||
| WBPaper00034850 | |||||||||
| WBPaper00036882 | |||||||||
| WBPaper00037715 | |||||||||
| WBPaper00052142 | |||||||||
| WBPaper00055058 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
