WormBase Tree Display for Gene: WBGene00006926
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| WBGene00006926 | SMap | S_parent | Sequence | C42D8 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | vit-2 | Person_evidence | WBPerson71 | |||||
| Sequence_name | C42D8.2 | ||||||||
| Molecular_name | C42D8.2 | ||||||||
| C42D8.2.1 | |||||||||
| CE06950 | |||||||||
| Other_name | CELE_C42D8.2 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | vit-2 | ||||||||
| DB_info | Database | WormQTL | gene | WBGene00006926 | |||||
| WormFlux | gene | WBGene00006926 | |||||||
| NDB | locus_tag | CELE_C42D8.2 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00006926|UniProtKB=P05690 | |||||||
| family | PTHR23345 | ||||||||
| NCBI | gene | 180781 | |||||||
| RefSeq | protein | NM_076467.7 | |||||||
| SwissProt | UniProtAcc | P05690 | |||||||
| UniProt_GCRP | UniProtAcc | P05690 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:43 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | vit | ||||||||
| Allele (95) | |||||||||
| Legacy_information | Structural gene for vitellogenin yp170B. | ||||||||
| [C.elegansII] NMK. 4.9 kb transcript, specific to adult hermaphrodite intestine, encodes vitellogenin yp170B (67% identity to VIT-5). Extensive promoter analysis. [Speith et al. 1985b; MacMorris et al. 1994; BL] | |||||||||
| Strain (11) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00038891 | ||||||||
| 00038892 | |||||||||
| 00038893 | |||||||||
| 00038894 | |||||||||
| 00038895 | |||||||||
| 00038896 | |||||||||
| 00038897 | |||||||||
| 00038898 | |||||||||
| 00115036 | |||||||||
| 00115037 | |||||||||
| Ortholog (64) | |||||||||
| Paralog | WBGene00006925 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00006927 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00006928 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00006929 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00006930 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | vit-2 encodes the vitellogenin homolog YP170; vit-2 is expressed in the adult hermaphrodite intestine and VIT-2 is secreted into the pseudocoelomic space before being taken up by developing oocytes; vit-2 expression is regulated in a sex-, stage-, and tissue-specific manner by the ELT-2/GATA and MAB-3 transcription factors. | Paper_evidence | WBPaper00003831 | |||||
| WBPaper00004538 | |||||||||
| WBPaper00032471 | |||||||||
| WBPaper00001864 | |||||||||
| WBPaper00003452 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| WBPerson567 | |||||||||
| Date_last_updated | 24 Mar 2014 00:00:00 | ||||||||
| Automated_description | Predicted to enable lipid transporter activity. Predicted to be involved in lipid transport. Located in cytoplasmic vesicle; vesicle lumen; and yolk granule. Expressed in embryonic cell; gonad; intestine; oocyte; and pseudocoelom. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C42D8.2 | |||||||
| Corresponding_CDS_history | C42D8.2:wp176 | ||||||||
| C42D8.2b:wp271 | |||||||||
| Corresponding_transcript | C42D8.2.1 | ||||||||
| Other_sequence (264) | |||||||||
| Associated_feature (19) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00095269 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00042364 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00095273 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00063230 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00001993 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00063231 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr520 | ||||||||
| Expr11396 | |||||||||
| Expr12138 | |||||||||
| Expr12674 | |||||||||
| Expr16161 | |||||||||
| Expr1015447 | |||||||||
| Expr1032943 | |||||||||
| Expr1146349 | |||||||||
| Expr2018001 | |||||||||
| Expr2036137 | |||||||||
| Drives_construct (19) | |||||||||
| Construct_product | WBCnstr00000145 | ||||||||
| WBCnstr00012417 | |||||||||
| WBCnstr00018820 | |||||||||
| WBCnstr00021273 | |||||||||
| WBCnstr00022596 | |||||||||
| WBCnstr00034094 | |||||||||
| WBCnstr00041719 | |||||||||
| Regulate_expr_cluster | WBPaper00051305:vit-2(ac3)_downregulated | ||||||||
| WBPaper00051305:vit-2(ac3)_upregulated | |||||||||
| Antibody | WBAntibody00000018 | ||||||||
| Microarray_results (21) | |||||||||
| Expression_cluster (320) | |||||||||
| Interaction (317) | |||||||||
| Map_info | Map | X | Position | -6.18804 | Error | 0.002606 | |||
| Positive | Positive_clone | C42D8 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| U32 | |||||||||
| Pseudo_map_position | |||||||||
| Reference (114) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
