WormBase Tree Display for Gene: WBGene00006040
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| WBGene00006040 | SMap | S_parent | Sequence | T28H11 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | ssp-11 | Person_evidence | WBPerson680 | |||||
| Sequence_name | T28H11.6 | ||||||||
| Molecular_name | T28H11.6 | ||||||||
| T28H11.6.1 | |||||||||
| CE09149 | |||||||||
| Other_name | CELE_T28H11.6 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | ssp-11 | ||||||||
| DB_info | Database | AceView | gene | 4F764 | |||||
| WormQTL | gene | WBGene00006040 | |||||||
| WormFlux | gene | WBGene00006040 | |||||||
| NDB | locus_tag | CELE_T28H11.6 | |||||||
| NCBI | gene | 177266 | |||||||
| RefSeq | protein | NM_068298.7 | |||||||
| SwissProt | UniProtAcc | Q23058 | |||||||
| UniProt_GCRP | UniProtAcc | Q23058 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:39 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | ssp | ||||||||
| Allele | WBVar00424453 | ||||||||
| WBVar01499754 | |||||||||
| WBVar01997287 | |||||||||
| WBVar01569457 | |||||||||
| WBVar01569458 | |||||||||
| WBVar01496462 | |||||||||
| WBVar00908208 | |||||||||
| WBVar01499242 | |||||||||
| WBVar01499633 | |||||||||
| WBVar01500245 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (30) | |||||||||
| Paralog (30) | |||||||||
| Structured_description | Concise_description | ssp-11 encodes a sperm-specific protein; loss of ssp-11 activity via RNAi has been reported to result in moderately increased fat content. | Paper_evidence | WBPaper00005655 | |||||
| WBPaper00024421 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 24 Jul 2008 00:00:00 | ||||||||
| Automated_description | Enriched in sperm and in male based on RNA-seq and single-cell RNA-seq studies. Is affected by several genes including daf-2; skn-1; and glp-1 based on microarray; RNA-seq; and proteomic studies. Is affected by twenty-one chemicals including Ethanol; methylmercuric chloride; and D-glucose based on RNA-seq; microarray; and proteomic studies. Is predicted to encode a protein with the following domains: PapD-like superfamily; Major sperm protein (MSP) domain; Immunoglobulin-like fold; MSP (Major sperm protein) domain; and Phosphorylation site. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | T28H11.6 | |||||||
| Corresponding_transcript | T28H11.6.1 | ||||||||
| Other_sequence (56) | |||||||||
| Associated_feature | WBsf230036 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00012670 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00054454 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00019423 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00043640 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1157999 | ||||||||
| Expr2016932 | |||||||||
| Expr2035079 | |||||||||
| Drives_construct | WBCnstr00034579 | ||||||||
| Construct_product | WBCnstr00034579 | ||||||||
| Microarray_results | SMD_T28H11.6 | ||||||||
| SMD_T28H11.6:2 | |||||||||
| 172704_x_at | |||||||||
| A_12_P103857 | |||||||||
| A_12_P153750 | |||||||||
| GPL9450_T28H11.6 | |||||||||
| cea2.d.40731 | |||||||||
| Expression_cluster (167) | |||||||||
| Interaction (86) | |||||||||
| Map_info | Map | IV | Position | 1.4041 | Error | 0.000897 | |||
| Positive | Positive_clone | T28H11 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00024421 | ||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
