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WormBase Tree Display for Gene: WBGene00008040

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Name Class

WBGene00008040SMapS_parentSequenceC40H1
IdentityVersion2
NameCGC_namettr-5
Sequence_nameC40H1.5
Molecular_nameC40H1.5
C40H1.5.1
CE00113
Other_nameCELE_C40H1.5Accession_evidenceNDBBX284603
Public_namettr-5
DB_infoDatabaseAceViewgene3K419
WormQTLgeneWBGene00008040
WormFluxgeneWBGene00008040
NDBlocus_tagCELE_C40H1.5
PanthergeneCAEEL|WormBase=WBGene00008040|UniProtKB=Q03575
familyPTHR21700
NCBIgene176312
RefSeqproteinNM_066653.4
SwissProtUniProtAccQ03575
TREEFAMTREEFAM_IDTF315773
UniProt_GCRPUniProtAccQ03575
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:48WBPerson1971EventImportedInitial conversion from CDS class of WS125
220 Sep 2007 11:48:01WBPerson2970Name_changeCGC_namettr-5
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classttr
AlleleWBVar01500260
WBVar01499774
WBVar00849884
WBVar00849885
WBVar00849886
RNASeq_FPKM (74)
GO_annotation00052370
00052371
00052372
00052373
00115998
Ortholog (37)
ParalogWBGene00003742Caenorhabditis elegansFrom_analysisPanther
WBGene00007142Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00007304Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00007535Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00007590Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00007888Caenorhabditis elegansFrom_analysisTreeFam
Panther
WBGene00018978Caenorhabditis elegansFrom_analysisTreeFam
Panther
WBGene00020886Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00012383Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00008719Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00010225Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00022515Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00017688Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00011460Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00017667Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00012382Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00013077Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00013078Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00020049Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00010234Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00013079Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00010541Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00010539Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00017839Caenorhabditis elegansFrom_analysisPanther
WBGene00020047Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00011561Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00020566Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00044788Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00011894Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00011285Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00009759Caenorhabditis elegansFrom_analysisTreeFam
Panther
WBGene00012849Caenorhabditis elegansFrom_analysisTreeFam
Panther
WBGene00017600Caenorhabditis elegansFrom_analysisTreeFam
Panther
WBGene00020335Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00011284Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00018085Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00008628Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00018979Caenorhabditis elegansFrom_analysisTreeFam
Panther
WBGene00050896Caenorhabditis elegansFrom_analysisTreeFam
Panther
WBGene00011450Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00011286Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00044605Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00019203Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00044737Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00023485Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00008341Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00017374Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00020339Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00235391Caenorhabditis elegansFrom_analysisPanther
WBGene00009758Caenorhabditis elegansFrom_analysisPanther
WBGene00017091Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00045455Caenorhabditis elegansFrom_analysisPanther
WBGene00044663Caenorhabditis elegansFrom_analysisPanther
WBGene00016164Caenorhabditis elegansFrom_analysisPanther
WBGene00045245Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00010440Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00010538Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00011571Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00016505Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00011774Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00011773Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00050892Caenorhabditis elegansFrom_analysisPanther
Structured_descriptionConcise_descriptionC40H1.5 encodes a protein containing a predicted signal sequence followed by a transthyretin-like domain; the product of C40H1.5 belongs to a family of apparently nematode-specific proteins whose function is not yet known.Paper_evidenceWBPaper00002969
Curator_confirmedWBPerson1843
Date_last_updated04 Sep 2007 00:00:00
Automated_descriptionPredicted to be located in cell surface and extracellular region.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSC40H1.5
Corresponding_transcriptC40H1.5.1
Other_sequence (118)
Associated_featureWBsf225550
Experimental_infoRNAi_resultWBRNAi00029711Inferred_automaticallyRNAi_primary
WBRNAi00011820Inferred_automaticallyRNAi_primary
WBRNAi00006140Inferred_automaticallyRNAi_primary
WBRNAi00078581Inferred_automaticallyRNAi_primary
WBRNAi00042261Inferred_automaticallyRNAi_primary
WBRNAi00078622Inferred_automaticallyRNAi_primary
Expr_patternExpr1026349
Expr1033494
Expr1146252
Expr2017624
Expr2035764
Drives_constructWBCnstr00033283
Construct_productWBCnstr00033283
Microarray_results (19)
Expression_cluster (221)
Interaction (177)
Map_infoMapIIIPosition0.412782Error0.003006
PositivePositive_cloneC40H1Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00002969
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene