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WormBase Tree Display for Gene: WBGene00020047

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Name Class

WBGene00020047SMapS_parentSequenceR13A5
IdentityVersion2
NameCGC_namettr-32
Sequence_nameR13A5.3
Molecular_nameR13A5.3
R13A5.3.1
CE01375
R13A5.3.2
Other_nameCELE_R13A5.3Accession_evidenceNDBBX284603
Public_namettr-32
DB_infoDatabaseAceViewgene3I655
WormQTLgeneWBGene00020047
WormFluxgeneWBGene00020047
NDBlocus_tagCELE_R13A5.3
PanthergeneCAEEL|WormBase=WBGene00020047|UniProtKB=Q95Y92
familyPTHR21700
NCBIgene187854
RefSeqproteinNM_066257.2
TREEFAMTREEFAM_IDTF315773
TrEMBLUniProtAccQ95Y92
UniProt_GCRPUniProtAccQ95Y92
SpeciesCaenorhabditis elegans
HistoryVersion_change128 May 2004 13:31:02WBPerson1971EventImportedInitial conversion from CDS class of stlace from WS125
220 Sep 2007 11:48:01WBPerson2970Name_changeCGC_namettr-32
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classttr
Allele (19)
RNASeq_FPKM (74)
GO_annotation00089440
00089441
00124580
Ortholog (27)
Paralog (62)
Structured_descriptionConcise_descriptionR13A5.3 encodes a protein containing a predicted signal sequence followed by a transthyretin-like domain; although the product of R13A5.3 belongs to a family of apparently nematode-specific proteins whose function is not yet known, loss of R13A5.3 activity via RNAi has been reported to result in hyperactive locomotion.Paper_evidenceWBPaper00002969
WBPaper00005487
Curator_confirmedWBPerson1843
Date_last_updated04 Sep 2007 00:00:00
Automated_descriptionPredicted to be located in cell surface and extracellular region.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS290 version of WormBase
Date_last_updated11 Sep 2023 00:00:00
Molecular_infoCorresponding_CDSR13A5.3
Corresponding_transcriptR13A5.3.1
R13A5.3.2
Other_sequence (17)
Associated_featureWBsf645347
WBsf225266
Experimental_infoRNAi_resultWBRNAi00062788Inferred_automaticallyRNAi_primary
WBRNAi00005677Inferred_automaticallyRNAi_primary
WBRNAi00034916Inferred_automaticallyRNAi_primary
WBRNAi00017818Inferred_automaticallyRNAi_primary
WBRNAi00051889Inferred_automaticallyRNAi_primary
Expr_patternExpr1017122
Expr1155546
Expr2017598
Expr2035737
Drives_constructWBCnstr00025404
Construct_productWBCnstr00025404
Microarray_results (19)
Expression_cluster (177)
Interaction (118)
Map_infoMapIIIPosition-0.666614Error0.000371
PositivePositive_cloneR13A5Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00002969
WBPaper00005487
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene