WormBase Tree Display for Gene: WBGene00012382
expand all nodes | collapse all nodes | view schema
| WBGene00012382 | SMap | S_parent | Sequence | Y5F2A | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | ttr-16 | |||||||
| Sequence_name | Y5F2A.1 | ||||||||
| Molecular_name | Y5F2A.1 | ||||||||
| Y5F2A.1.1 | |||||||||
| CE19022 | |||||||||
| Other_name | CELE_Y5F2A.1 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | ttr-16 | ||||||||
| DB_info | Database | AceView | gene | 4L828 | |||||
| WormQTL | gene | WBGene00012382 | |||||||
| WormFlux | gene | WBGene00012382 | |||||||
| NDB | locus_tag | CELE_Y5F2A.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00012382|UniProtKB=P55955 | |||||||
| family | PTHR21700 | ||||||||
| NCBI | gene | 178002 | |||||||
| RefSeq | protein | NM_001383201.2 | |||||||
| SwissProt | UniProtAcc | P55955 | |||||||
| TREEFAM | TREEFAM_ID | TF315773 | |||||||
| UniProt_GCRP | UniProtAcc | P55955 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:53 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 20 Sep 2007 11:48:01 | WBPerson2970 | Name_change | CGC_name | ttr-16 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | ttr | ||||||||
| Allele (12) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00048647 | ||||||||
| 00048648 | |||||||||
| 00119535 | |||||||||
| Ortholog (26) | |||||||||
| Paralog (62) | |||||||||
| Structured_description | Automated_description | Predicted to be located in cell surface and extracellular region. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y5F2A.1 | |||||||
| Corresponding_transcript | Y5F2A.1.1 | ||||||||
| Other_sequence (66) | |||||||||
| Associated_feature | WBsf652180 | ||||||||
| WBsf652181 | |||||||||
| WBsf668288 | |||||||||
| WBsf230810 | |||||||||
| WBsf230811 | |||||||||
| WBsf230812 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00021182 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00057789 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00037642 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00001663 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1013713 | ||||||||
| Expr1035485 | |||||||||
| Expr1161219 | |||||||||
| Expr2017580 | |||||||||
| Expr2035720 | |||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (175) | |||||||||
| Interaction (86) | |||||||||
| Map_info | Map | IV | Position | 4.82258 | |||||
| Positive | Positive_clone | Y5F2A | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00033099 | ||||||||
| WBPaper00063976 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
