WormBase Tree Display for Gene: WBGene00020049
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| WBGene00020049 | SMap | S_parent | Sequence | R13A5 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | ttr-8 | |||||||
| Sequence_name | R13A5.6 | ||||||||
| Molecular_name | R13A5.6 | ||||||||
| R13A5.6.1 | |||||||||
| CE01378 | |||||||||
| Other_name | CELE_R13A5.6 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | ttr-8 | ||||||||
| DB_info | Database | AceView | gene | 3I654 | |||||
| WormQTL | gene | WBGene00020049 | |||||||
| WormFlux | gene | WBGene00020049 | |||||||
| NDB | locus_tag | CELE_R13A5.6 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00020049|UniProtKB=Q95Y93 | |||||||
| family | PTHR21700 | ||||||||
| NCBI | gene | 187856 | |||||||
| RefSeq | protein | NM_066256.2 | |||||||
| TREEFAM | TREEFAM_ID | TF315773 | |||||||
| TrEMBL | UniProtAcc | Q95Y93 | |||||||
| UniProt_GCRP | UniProtAcc | Q95Y93 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:02 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 20 Sep 2007 11:48:01 | WBPerson2970 | Name_change | CGC_name | ttr-8 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | ttr | ||||||||
| Allele (12) | |||||||||
| Strain | WBStrain00002546 | ||||||||
| WBStrain00002210 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00089798 | ||||||||
| 00124774 | |||||||||
| Ortholog (29) | |||||||||
| Paralog (62) | |||||||||
| Structured_description | Concise_description | R13A5.6 encodes a protein containing a predicted signal sequence followed by a transthyretin-like domain; the product of R13A5.6 belongs to a family of apparently nematode-specific proteins whose function is not yet known; an R13A5.6::GFP promoter fusion directs expression outside of the nervous system. | Paper_evidence | WBPaper00002969 | |||||
| WBPaper00028592 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 04 Sep 2007 00:00:00 | ||||||||
| Automated_description | Predicted to be located in cell surface and extracellular region. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | R13A5.6 | |||||||
| Corresponding_transcript | R13A5.6.1 | ||||||||
| Other_sequence (119) | |||||||||
| Associated_feature | WBsf227000 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00051893 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00017820 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00034918 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00006730 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Chronogram1168 | ||||||||
| Expr4313 | |||||||||
| Expr6521 | |||||||||
| Expr6522 | |||||||||
| Expr1017010 | |||||||||
| Expr1155549 | |||||||||
| Drives_construct | WBCnstr00002952 | ||||||||
| WBCnstr00004469 | |||||||||
| WBCnstr00011912 | |||||||||
| WBCnstr00025402 | |||||||||
| Construct_product | WBCnstr00025402 | ||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (202) | |||||||||
| Interaction | WBInteraction000276290 | ||||||||
| WBInteraction000346034 | |||||||||
| Map_info | Map | III | Position | -0.667512 | Error | 0.000354 | |||
| Positive | Positive_clone | R13A5 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00002969 | ||||||||
| WBPaper00028592 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
