WormBase Tree Display for Gene: WBGene00020049

WBGene00020049 SMap: S_parent: Sequence: R13A5
  Identity: Version: 2
    Name: CGC_name: ttr-8
      Sequence_name: R13A5.6
      Molecular_name: R13A5.6
        R13A5.6.1
        CE01378
      Other_name: CELE_R13A5.6 Accession_evidence: NDB BX284603
      Public_name: ttr-8
    DB_info: Database: AceView gene 3I654
        WormQTL gene WBGene00020049
        WormFlux gene WBGene00020049
        NDB locus_tag CELE_R13A5.6
        Panther gene CAEEL|WormBase=WBGene00020049|UniProtKB=Q95Y93
          family PTHR21700
        NCBI gene 187856
        RefSeq protein NM_066256.2
        TREEFAM TREEFAM_ID TF315773
        TrEMBL UniProtAcc Q95Y93
        UniProt_GCRP UniProtAcc Q95Y93
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:31:02 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 20 Sep 2007 11:48:01 WBPerson2970 Name_change: CGC_name: ttr-8
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: ttr
    Allele (12)
    Strain: WBStrain00002546
      WBStrain00002210
    RNASeq_FPKM (74)
    GO_annotation: 00089798
      00124774
    Ortholog: WBGene00030803 Caenorhabditis briggsae From_analysis: OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00085736 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00104714 Pristionchus pacificus From_analysis: OMA
      WBGene00109314 Pristionchus pacificus From_analysis: OMA
      WBGene00115347 Pristionchus pacificus From_analysis: OMA
      WBGene00119026 Pristionchus pacificus From_analysis: OMA
      WBGene00153036 Caenorhabditis brenneri From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00125402 Caenorhabditis japonica From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00115339 Pristionchus pacificus From_analysis: OMA
      CBOVI.g5596 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g8008 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g17055 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g18680 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g22383 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g20963 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g3330 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g3226 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g19029 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP39.g23534 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g5907 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00001.g44 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-ttr-8 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold630.g19568 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00853.g16118 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_07334 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_009000 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g12669 Oscheius tipulae From_analysis: WormBase-Compara
      Sp34_30048600 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrIII_pilon.g8182 Caenorhabditis elegans From_analysis: WormBase-Compara
    Paralog (62)
    Structured_description: Concise_description: R13A5.6 encodes a protein containing a predicted signal sequence followed by a transthyretin-like domain; the product of R13A5.6 belongs to a family of apparently nematode-specific proteins whose function is not yet known; an R13A5.6::GFP promoter fusion directs expression outside of the nervous system. Paper_evidence: WBPaper00002969
            WBPaper00028592
          Curator_confirmed: WBPerson1843
          Date_last_updated: 04 Sep 2007 00:00:00
      Automated_description: Predicted to be located in cell surface and extracellular region. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: R13A5.6
    Corresponding_transcript: R13A5.6.1
    Other_sequence (119)
    Associated_feature: WBsf227000
  Experimental_info: RNAi_result: WBRNAi00051893 Inferred_automatically: RNAi_primary
      WBRNAi00017820 Inferred_automatically: RNAi_primary
      WBRNAi00034918 Inferred_automatically: RNAi_primary
      WBRNAi00006730 Inferred_automatically: RNAi_primary
    Expr_pattern: Chronogram1168
      Expr4313
      Expr6521
      Expr6522
      Expr1017010
      Expr1155549
    Drives_construct: WBCnstr00002952
      WBCnstr00004469
      WBCnstr00011912
      WBCnstr00025402
    Construct_product: WBCnstr00025402
    Microarray_results (18)
    Expression_cluster (202)
    Interaction: WBInteraction000276290
      WBInteraction000346034
  Map_info: Map: III Position: -0.667512 Error: 0.000354
    Positive: Positive_clone: R13A5 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00002969
    WBPaper00028592
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene