WormBase Tree Display for Gene: WBGene00003742
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| WBGene00003742 | SMap | S_parent | Sequence | F59C6 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | nlp-4 | Person_evidence | WBPerson242 | |||||
| Sequence_name | F59C6.6 | ||||||||
| Molecular_name | F59C6.6 | ||||||||
| F59C6.6.1 | |||||||||
| CE45987 | |||||||||
| Other_name | CELE_F59C6.6 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | nlp-4 | ||||||||
| DB_info | Database | AceView | gene | 1L94 | |||||
| WormQTL | gene | WBGene00003742 | |||||||
| WormFlux | gene | WBGene00003742 | |||||||
| NDB | locus_tag | CELE_F59C6.6 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00003742|UniProtKB=Q93832 | |||||||
| family | PTHR21700 | ||||||||
| NCBI | gene | 172932 | |||||||
| RefSeq | protein | NM_060349.6 | |||||||
| TrEMBL | UniProtAcc | Q93832 | |||||||
| UniProt_GCRP | UniProtAcc | Q93832 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:32 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 28 Mar 2011 09:48:56 | WBPerson1983 | Event | Split_into | WBGene00206464 | ||||
| Split_into | WBGene00206464 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | nlp | ||||||||
| Allele (12) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00086697 | ||||||||
| 00111779 | |||||||||
| Ortholog (20) | |||||||||
| Paralog (62) | |||||||||
| Structured_description | Concise_description | nlp-4 encodes three predicted neuropeptide-like proteins; nlp-4 has no none homologs in other nematode species, and its expression pattern has not been determined; in addition, as loss of nlp-4 activity via large-scale RNAi screens does not result in any obvious abnormalities, the precise role of nlp-4-encoded peptides in development and/or behavior is not yet known. | Paper_evidence | WBPaper00004402 | |||||
| WBPaper00004975 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to be located in cell surface and extracellular region. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F59C6.6 | |||||||
| Corresponding_CDS_history | F59C6.6:wp225 | ||||||||
| Corresponding_transcript | F59C6.6.1 | ||||||||
| Other_sequence | CBC06568_1 | ||||||||
| Associated_feature | WBsf649582 | ||||||||
| WBsf981090 | |||||||||
| WBsf985024 | |||||||||
| WBsf1010559 | |||||||||
| WBsf220253 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00003867 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00049165 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1698 | ||||||||
| Expr1025584 | |||||||||
| Expr1152912 | |||||||||
| Expr2014313 | |||||||||
| Expr2032554 | |||||||||
| Drives_construct | WBCnstr00010389 | ||||||||
| WBCnstr00035901 | |||||||||
| Construct_product | WBCnstr00035901 | ||||||||
| Microarray_results | SMD_F59C6.6 | ||||||||
| 178759_at | |||||||||
| Aff_F59C6.6 | |||||||||
| GPL14144_F59C6.6_111-170_0.933_9_A | |||||||||
| GPL14144_F59C6.6_211-270_0.926_12_B | |||||||||
| GPL14144_F59C6.6_86-145_0.928_11_C | |||||||||
| GPL19516_CGZ0025566 | |||||||||
| GPL21109_F59C6.6 | |||||||||
| GPL8673_F59C6_6P00106 | |||||||||
| GPL8673_F59C6_6P00118 | |||||||||
| Expression_cluster (143) | |||||||||
| Interaction | WBInteraction000302969 | ||||||||
| WBInteraction000400358 | |||||||||
| WBInteraction000432011 | |||||||||
| WBInteraction000459701 | |||||||||
| Map_info | Map | I | Position | 5.05462 | Error | 3.3e-05 | |||
| Positive | Positive_clone | F59C6 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00003915 | ||||||||
| WBPaper00004975 | |||||||||
| WBPaper00006465 | |||||||||
| WBPaper00026655 | |||||||||
| WBPaper00031998 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
