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WormBase Tree Display for Gene: WBGene00003434

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Name Class

WBGene00003434SMapS_parentSequenceK08F4
IdentityVersion1
NameCGC_namemsp-38Person_evidenceWBPerson680
Sequence_nameK08F4.8
Molecular_nameK08F4.8
K08F4.8.1
CE06156
Other_nameCELE_K08F4.8Accession_evidenceNDBBX284604
Public_namemsp-38
DB_infoDatabaseAceViewgene4K908
WormQTLgeneWBGene00003434
WormFluxgeneWBGene00003434
NDBlocus_tagCELE_K08F4.8
PanthergeneCAEEL|WormBase=WBGene00003434|UniProtKB=P53020
familyPTHR22920
NCBIgene177887
RefSeqproteinNM_069448.10
SwissProtUniProtAccP53020
UniProt_GCRPUniProtAccP53020
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:31WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classmsp
AlleleWBVar01500079
WBVar01498996
WBVar01499925
WBVar00091644
WBVar00433523
WBVar00936008
WBVar00093509
WBVar00936009
WBVar00936010
WBVar01500245
Legacy_information[C.elegansII] NMK. Encodes MSP (16kD); msp-77 cluster. [Ward et al. (1988); BA]
StrainWBStrain00031388
WBStrain00032514
RNASeq_FPKM (74)
GO_annotation00047999
00048000
00048001
00048002
00048003
00048004
00048005
Ortholog (31)
ParalogWBGene00003424Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
Panther
WormBase-Compara
WBGene00003425Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
Panther
WormBase-Compara
WBGene00003426Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
Panther
WormBase-Compara
WBGene00003429Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
WBGene00003430Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
Panther
WormBase-Compara
WBGene00003431Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
Panther
WormBase-Compara
WBGene00003432Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
WBGene00003469Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
WBGene00018008
WBGene00003470Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
Panther
WormBase-Compara
WBGene00021997Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
Panther
WormBase-Compara
WBGene00003464Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
Panther
WormBase-Compara
WBGene00003442Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
Panther
WormBase-Compara
WBGene00003448Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
Panther
WormBase-Compara
WBGene00003465Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
Panther
WormBase-Compara
WBGene00003435Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
WBGene00003438Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
WBGene00003443Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
WBGene00003456Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
Panther
WormBase-Compara
WBGene00003457Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
WBGene00022760Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
WBGene00003446Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
WBGene00022005Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
Panther
WormBase-Compara
WBGene00003466Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
WBGene00022002Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
WBGene00003450Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
WBGene00013773Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00013777Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00003449Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
WBGene00003463Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
WBGene00044805Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
WBGene00018840Caenorhabditis elegansFrom_analysisTreeFam
WBGene00003444Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
WBGene00003452Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
WBGene00003467Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
WBGene00003458Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
WBGene00022546Caenorhabditis elegansFrom_analysisTreeFam
WBGene00003451Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00016082Caenorhabditis elegansFrom_analysisPanther
WBGene00022884Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00013658Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00003462Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00013047Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00010951Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00003468Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00007987Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00015215Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00019026Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00020416Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00022875Caenorhabditis elegansFrom_analysisWormBase-Compara
Structured_descriptionConcise_descriptionmsp-38 encodes a member of the major sperm protein family; msp-38 has a C. briggsae homolog as predicted by the Wobble Bulk Aware Bulk Aligner (WABA).Paper_evidenceWBPaper00004280
Curator_confirmedWBPerson48
WBPerson324
Date_last_updated06 May 2005 00:00:00
Automated_descriptionInvolved in oocyte maturation and positive regulation of smooth muscle contraction. Predicted to be located in cytoplasm; cytoskeleton; and pseudopodium. Expressed in gonad; oocyte; and sperm.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSK08F4.8
Corresponding_transcriptK08F4.8.1
Other_sequence (19)
Associated_featureWBsf997561
WBsf1018052
WBsf230680
Experimental_infoRNAi_result (15)
Expr_patternExpr3417
Expr1025688
Expr1154027
Expr2032013
Drives_constructWBCnstr00036119
Construct_productWBCnstr00036119
AntibodyWBAntibody00000037
WBAntibody00000038
WBAntibody00000854
WBAntibody00000855
WBAntibody00000856
WBAntibody00000857
WBAntibody00000858
Microarray_resultsSMD_K08F4.8
A_12_P120059
Aff_K08F4.8
GPL19516_CGZ0028623
GPL21109_K08F4.8
GPL3518_CE06156
GPL8304_CE_WBGene00003434_C
GPL8673_K08F4_8P00023
GPL8673_K08F4_8P00049
Expression_cluster (208)
InteractionWBInteraction000222706
WBInteraction000305909
WBInteraction000330005
WBInteraction000380662
WBInteraction000424899
WBInteraction000429884
WBInteraction000439935
WBInteraction000440809
WBInteraction000557902
WBInteraction000580176
Map_infoMapIVPosition4.53898Error0.000934
PositivePositive_cloneK08F4Inferred_automaticallyFrom sequence, transcript, pseudogene data
Mapping_dataMulti_point4498
4743
Pseudo_map_position
ReferenceWBPaper00001023
WBPaper00001024
WBPaper00004591
WBPaper00015440
WBPaper00024312
WBPaper00025088
WBPaper00057218
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene