WormBase Tree Display for Gene: WBGene00003470
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| WBGene00003470 | SMap | S_parent | Sequence | ZK546 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | msp-152 | Person_evidence | WBPerson680 | |||||
| Sequence_name | ZK546.6 | ||||||||
| Molecular_name | ZK546.6 | ||||||||
| ZK546.6.1 | |||||||||
| CE02920 | |||||||||
| Other_name | CELE_ZK546.6 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | msp-152 | ||||||||
| DB_info | Database | AceView | gene | 2F225 | |||||
| WormQTL | gene | WBGene00003470 | |||||||
| WormFlux | gene | WBGene00003470 | |||||||
| NDB | locus_tag | CELE_ZK546.6 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00003470|UniProtKB=Q23519 | |||||||
| family | PTHR22920 | ||||||||
| NCBI | gene | 191712 | |||||||
| RefSeq | protein | NM_062500.10 | |||||||
| SwissProt | UniProtAcc | Q23519 | |||||||
| UniProt_GCRP | UniProtAcc | Q23519 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:32 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | msp | ||||||||
| Allele | WBVar01499702 | ||||||||
| WBVar01498435 | |||||||||
| WBVar00728973 | |||||||||
| WBVar00728974 | |||||||||
| WBVar00728975 | |||||||||
| WBVar00365113 | |||||||||
| WBVar01783278 | |||||||||
| WBVar01783279 | |||||||||
| Legacy_information | Cluster of five genes including msp-152 (transcribed). | ||||||||
| [C.elegansII] NMK. Encodes MSP (16kD). Defines cluster of five genes including msp-152 (transcribed). [Ward et al. (1988); BA] | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00078717 | ||||||||
| 00078718 | |||||||||
| 00078719 | |||||||||
| 00078720 | |||||||||
| 00078721 | |||||||||
| Ortholog (31) | |||||||||
| Paralog (50) | |||||||||
| Structured_description | Concise_description | msp-152 encodes a protein that belongs to a family of proteins called the Major Sperm Proteins (MSPs) that is conserved in nematodes; this family consists of closely related, small, basic proteins that make up 15% of sperm protein; this multigene family consists of over fifty genes, including many pseudogenes; MSPs are involved in both extracellular signaling and cytoskeletal functions during reproduction-MSP antagonizes Eph/ephrin signaling, in part, by binding VAB-1 Eph receptor tyrosine kinase on oocytes and sheath cells to promote oocyte maturation and MAPK activation; MSPs assemble into fibrous networks that drive movement of the C. elegans sperm; msp genes are expressed only in late primary spermatocytes. | Paper_evidence | WBPaper00001023 | |||||
| WBPaper00002143 | |||||||||
| WBPaper00003113 | |||||||||
| WBPaper00004591 | |||||||||
| WBPaper00005670 | |||||||||
| Curator_confirmed | WBPerson324 | ||||||||
| Date_last_updated | 17 May 2005 00:00:00 | ||||||||
| Automated_description | Predicted to be located in cytoplasm; cytoskeleton; and pseudopodium. Expressed in gonad; oocyte; and sperm. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | ZK546.6 | |||||||
| Corresponding_transcript | ZK546.6.1 | ||||||||
| Other_sequence (25) | |||||||||
| Associated_feature | WBsf221202 | ||||||||
| Experimental_info | RNAi_result (20) | ||||||||
| Expr_pattern | Expr3417 | ||||||||
| Expr1162926 | |||||||||
| Expr2013771 | |||||||||
| Expr2032007 | |||||||||
| Drives_construct | WBCnstr00036097 | ||||||||
| Construct_product | WBCnstr00036097 | ||||||||
| Antibody | WBAntibody00000037 | ||||||||
| WBAntibody00000038 | |||||||||
| WBAntibody00000854 | |||||||||
| WBAntibody00000855 | |||||||||
| WBAntibody00000856 | |||||||||
| WBAntibody00000857 | |||||||||
| WBAntibody00000858 | |||||||||
| Microarray_results | SMD_ZK546.6 | ||||||||
| 172798_x_at | |||||||||
| 172900_x_at | |||||||||
| A_12_P106775 | |||||||||
| A_12_P134310 | |||||||||
| Aff_ZK546.6 | |||||||||
| GPL3518_CE02920 | |||||||||
| GPL8673_ZK546_6P00192 | |||||||||
| Expression_cluster (241) | |||||||||
| Interaction (218) | |||||||||
| Map_info | Map | II | Position | -2.90252 | Error | 0.003087 | |||
| Positive | Positive_clone | BA#53 | |||||||
| ZK546 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00001023 | ||||||||
| WBPaper00001024 | |||||||||
| WBPaper00024312 | |||||||||
| WBPaper00025088 | |||||||||
| WBPaper00029226 | |||||||||
| WBPaper00031218 | |||||||||
| WBPaper00040308 | |||||||||
| WBPaper00044625 | |||||||||
| WBPaper00057218 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
