WormBase Tree Display for Gene: WBGene00003430
expand all nodes | collapse all nodes | view schema
| WBGene00003430 | SMap | S_parent | Sequence | R05F9 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | msp-32 | Person_evidence | WBPerson680 | |||||
| Sequence_name | R05F9.3 | ||||||||
| Molecular_name | R05F9.3 | ||||||||
| R05F9.3.1 | |||||||||
| CE52855 | |||||||||
| Other_name | CELE_R05F9.3 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | msp-32 | ||||||||
| DB_info | Database | AceView | gene | 2F189 | |||||
| WormQTL | gene | WBGene00003430 | |||||||
| WormFlux | gene | WBGene00003430 | |||||||
| NDB | locus_tag | CELE_R05F9.3 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00003430|UniProtKB=P53018 | |||||||
| family | PTHR22920 | ||||||||
| NCBI | gene | 191709 | |||||||
| RefSeq | protein | NM_001381404.1 | |||||||
| SwissProt | UniProtAcc | P53018 | |||||||
| UniProt_GCRP | UniProtAcc | P53018 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:31 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | msp | ||||||||
| Allele (21) | |||||||||
| Legacy_information | [C.elegansII] NMK. Encodes MSP (16kD); msp-152 cluster. [Ward et al. (1988); BA] | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00047989 | ||||||||
| 00047990 | |||||||||
| 00047991 | |||||||||
| 00047992 | |||||||||
| 00047993 | |||||||||
| Ortholog (35) | |||||||||
| Paralog (52) | |||||||||
| Structured_description | Concise_description | msp-32 encodes a protein that belongs to a family of proteins called the Major Sperm Proteins (MSPs) that is conserved in nematodes; msp-32 has a C. briggsae homolog as predicted by the Wobble Aware Bulk Aligner (WABA); the msp family consists of closely related, small, basic proteins that make up 15% of sperm protein; this multigene family consists of over fifty genes, including many pseudogenes; MSPs are involved in both extracellular signaling and cytoskeletal functions during reproduction-MSP antagonizes Eph/ephrin signaling, in part, by binding VAB-1 Eph receptor tyrosine kinase on oocytes and sheath cells to promote oocyte maturation and MAPK activation; MSPs assemble into fibrous networks that drive movement of the C. elegans sperm; msp genes are expressed only in late primary spermatocytes; msp-32 expression is upregulated in animals containing a mutation in C01G5.6, which encodes the C. elegans Ddi1/Vsm1 homolog and is required for normal synaptogenesis. | Paper_evidence | WBPaper00001023 | |||||
| WBPaper00002143 | |||||||||
| WBPaper00004280 | |||||||||
| WBPaper00004591 | |||||||||
| WBPaper00005670 | |||||||||
| WBPaper00040085 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| WBPerson324 | |||||||||
| Date_last_updated | 16 Aug 2011 00:00:00 | ||||||||
| Automated_description | Predicted to be located in cytoplasm; cytoskeleton; and pseudopodium. Expressed in gonad; oocyte; and sperm. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | R05F9.3 | |||||||
| Corresponding_CDS_history | R05F9.3:wp268 | ||||||||
| Corresponding_transcript | R05F9.3.1 | ||||||||
| Other_sequence (65) | |||||||||
| Experimental_info | RNAi_result (11) | ||||||||
| Expr_pattern | Expr3417 | ||||||||
| Expr1014283 | |||||||||
| Expr1155007 | |||||||||
| Expr2013773 | |||||||||
| Expr2032010 | |||||||||
| Drives_construct | WBCnstr00036122 | ||||||||
| Construct_product | WBCnstr00036122 | ||||||||
| Antibody | WBAntibody00000037 | ||||||||
| WBAntibody00000038 | |||||||||
| WBAntibody00000854 | |||||||||
| WBAntibody00000855 | |||||||||
| WBAntibody00000856 | |||||||||
| WBAntibody00000857 | |||||||||
| WBAntibody00000858 | |||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (89) | |||||||||
| Interaction (220) | |||||||||
| Map_info | Map | II | Position | -2.93824 | Error | 0.003799 | |||
| Positive | Positive_clone | R05F9 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00001023 | ||||||||
| WBPaper00015440 | |||||||||
| WBPaper00016429 | |||||||||
| WBPaper00024312 | |||||||||
| WBPaper00024704 | |||||||||
| WBPaper00040085 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
