WormBase Tree Display for Gene: WBGene00003431
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WBGene00003431 | SMap | S_parent | Sequence | R05F9 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | CGC_name | msp-33 | Person_evidence | WBPerson680 | |||||
Sequence_name | R05F9.8 | ||||||||
Molecular_name | R05F9.8 | ||||||||
R05F9.8.1 | |||||||||
CE04811 | |||||||||
Other_name | CELE_R05F9.8 | Accession_evidence | NDB | BX284602 | |||||
Public_name | msp-33 | ||||||||
DB_info | Database | AceView | gene | 2F182 | |||||
WormQTL | gene | WBGene00003431 | |||||||
WormFlux | gene | WBGene00003431 | |||||||
NDB | locus_tag | CELE_R05F9.8 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00003431|UniProtKB=P53019 | |||||||
family | PTHR22920 | ||||||||
NCBI | gene | 173844 | |||||||
RefSeq | protein | NM_062487.9 | |||||||
SwissProt | UniProtAcc | P53019 | |||||||
UniProt_GCRP | UniProtAcc | P53019 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:31 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | msp | ||||||||
Allele (13) | |||||||||
Legacy_information | [C.elegansII] NMK. Encodes MSP (16kD); msp-152 cluster. [Ward et al. (1988); BA] | ||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00047994 | ||||||||
00047995 | |||||||||
00047996 | |||||||||
00047997 | |||||||||
00047998 | |||||||||
Ortholog (33) | |||||||||
Paralog (50) | |||||||||
Structured_description | Concise_description | msp-33 encodes a protein that belongs to a family of proteins called the Major Sperm Proteins (MSPs) that is conserved in nematodes; msp-33 has a C. briggsae homolog as predicted by the Wobble Aware Bulk Aligner (WABA); the MSP family consists of closely related, small, basic proteins that make up 15% of sperm protein; this multigene family consists of over fifty genes, including many pseudogenes; MSPs are involved in both extracellular signaling and cytoskeletal functions during reproduction-MSP antagonizes Eph/ephrin signaling, in part, by binding VAB-1 Eph receptor tyrosine kinase on oocytes and sheath cells to promote oocyte maturation and MAPK activation; MSPs assemble into fibrous networks that drive movement of the C. elegans sperm; msp genes are expressed only in late primary spermatocytes. | Paper_evidence | WBPaper00001023 | |||||
WBPaper00002143 | |||||||||
WBPaper00004280 | |||||||||
WBPaper00004591 | |||||||||
WBPaper00005670 | |||||||||
Curator_confirmed | WBPerson324 | ||||||||
Date_last_updated | 06 May 2005 00:00:00 | ||||||||
Automated_description | Predicted to be located in cytoplasm; cytoskeleton; and pseudopodium. Expressed in gonad; oocyte; and sperm. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | R05F9.8 | |||||||
Corresponding_transcript | R05F9.8.1 | ||||||||
Other_sequence (22) | |||||||||
Associated_feature | WBsf222967 | ||||||||
Experimental_info | RNAi_result (25) | ||||||||
Expr_pattern | Expr3417 | ||||||||
Expr1022270 | |||||||||
Expr1155011 | |||||||||
Expr2013774 | |||||||||
Expr2032011 | |||||||||
Drives_construct | WBCnstr00036121 | ||||||||
Construct_product | WBCnstr00036121 | ||||||||
Antibody | WBAntibody00000037 | ||||||||
WBAntibody00000038 | |||||||||
WBAntibody00000854 | |||||||||
WBAntibody00000855 | |||||||||
WBAntibody00000856 | |||||||||
WBAntibody00000857 | |||||||||
WBAntibody00000858 | |||||||||
Microarray_results (21) | |||||||||
Expression_cluster (230) | |||||||||
Interaction (208) | |||||||||
Map_info | Map | II | Position | -2.94751 | |||||
Positive | Positive_clone | R05F9 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference | WBPaper00001023 | ||||||||
WBPaper00015440 | |||||||||
WBPaper00025088 | |||||||||
WBPaper00040308 | |||||||||
WBPaper00057218 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |