WormBase Tree Display for Gene: WBGene00003426
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| WBGene00003426 | SMap | S_parent | Sequence | F36H12 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | msp-19 | Person_evidence | WBPerson680 | |||||
| Sequence_name | F36H12.7 | ||||||||
| Molecular_name | F36H12.7 | ||||||||
| F36H12.7.1 | |||||||||
| CE02806 | |||||||||
| Other_name | CELE_F36H12.7 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | msp-19 | ||||||||
| DB_info | Database | AceView | gene | 4G25 | |||||
| WormQTL | gene | WBGene00003426 | |||||||
| WormFlux | gene | WBGene00003426 | |||||||
| NDB | locus_tag | CELE_F36H12.7 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00003426|UniProtKB=P53017 | |||||||
| family | PTHR22920 | ||||||||
| NCBI | gene | 177305 | |||||||
| RefSeq | protein | NM_001380219.1 | |||||||
| SwissProt | UniProtAcc | P53017 | |||||||
| UniProt_GCRP | UniProtAcc | P53017 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:31 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | msp | ||||||||
| Allele | WBVar00276507 | ||||||||
| WBVar01499365 | |||||||||
| WBVar00909457 | |||||||||
| WBVar01499754 | |||||||||
| WBVar01499395 | |||||||||
| WBVar01499396 | |||||||||
| WBVar00424881 | |||||||||
| WBVar01499242 | |||||||||
| WBVar01499633 | |||||||||
| WBVar01500245 | |||||||||
| Legacy_information | [C.elegansII] NMK. Encodes MSP (16kD); msp-113 cluster. [Ward et al. (1988); BA] | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00047984 | ||||||||
| 00047985 | |||||||||
| 00047986 | |||||||||
| 00047987 | |||||||||
| 00047988 | |||||||||
| Ortholog (22) | |||||||||
| Paralog (50) | |||||||||
| Structured_description | Concise_description | msp-19 encodes a protein that belongs to a family of proteins called the Major Sperm Proteins (MSPs) that is conserved in nematodes; msp-19 has a homolog in C. briggsae as predicted by the Wobble Aware Bulk Aligner (WABA); the msp gene family consists of closely related, small, basic proteins that make up 15% of sperm protein; this multigene family consists of over fifty genes, including many pseudogenes; MSPs are involved in both extracellular signaling and cytoskeletal functions during reproduction-MSP antagonizes Eph/ephrin signaling, in part, by binding VAB-1 Eph receptor tyrosine kinase on oocytes and sheath cells to promote oocyte maturation and MAPK activation; MSPs assemble into fibrous networks that drive movement of the C. elegans sperm; msp genes are expressed only in late primary spermatocytes. | Paper_evidence | WBPaper00001023 | |||||
| WBPaper00002143 | |||||||||
| WBPaper00004280 | |||||||||
| WBPaper00004591 | |||||||||
| WBPaper00005670 | |||||||||
| Curator_confirmed | WBPerson324 | ||||||||
| Date_last_updated | 26 Apr 2005 00:00:00 | ||||||||
| Automated_description | Predicted to be located in cytoplasm; cytoskeleton; and pseudopodium. Expressed in gonad; oocyte; and sperm. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F36H12.7 | |||||||
| Corresponding_transcript | F36H12.7.1 | ||||||||
| Other_sequence | GW407950.1 | ||||||||
| GW409550.1 | |||||||||
| HC04637 | |||||||||
| GW411381.1 | |||||||||
| PTC01347_1 | |||||||||
| GW407605.1 | |||||||||
| Associated_feature | WBsf228280 | ||||||||
| Experimental_info | RNAi_result (18) | ||||||||
| Expr_pattern | Expr3417 | ||||||||
| Expr1150418 | |||||||||
| Expr2013772 | |||||||||
| Expr2032008 | |||||||||
| Drives_construct | WBCnstr00036124 | ||||||||
| Construct_product | WBCnstr00036124 | ||||||||
| Antibody | WBAntibody00000037 | ||||||||
| WBAntibody00000038 | |||||||||
| WBAntibody00000854 | |||||||||
| WBAntibody00000855 | |||||||||
| WBAntibody00000856 | |||||||||
| WBAntibody00000857 | |||||||||
| WBAntibody00000858 | |||||||||
| Microarray_results | SMD_F36H12.7 | ||||||||
| SMD_F36H12.7:2 | |||||||||
| Aff_F36H12.7 | |||||||||
| GPL13394_WBGene00003426 | |||||||||
| GPL13914_F36H12.7 | |||||||||
| GPL8673_F36H12_7P00044 | |||||||||
| Expression_cluster (205) | |||||||||
| SAGE_tag | SAGE:gtggatcaactccaagt | Strand | Antisense | ||||||
| SAGE:tggagttctcgacccaa | Strand | Sense | |||||||
| SAGE:gtggatcaac | Strand | Antisense | |||||||
| SAGE:tggagttctc | Strand | Sense | |||||||
| Interaction (190) | |||||||||
| Map_info | Map | IV | Position | 1.58398 | Error | 0.000697 | |||
| Positive | Positive_clone | F36H12 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00001023 | ||||||||
| WBPaper00001024 | |||||||||
| WBPaper00015440 | |||||||||
| WBPaper00024312 | |||||||||
| WBPaper00041549 | |||||||||
| WBPaper00057218 | |||||||||
| Remark | removed from gmap IV 1.61 [jah/sdm 5/99 | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
