WormBase Tree Display for Gene: WBGene00003435
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WBGene00003435 | SMap | S_parent | Sequence | C33F10 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | CGC_name | msp-40 | Person_evidence | WBPerson680 | |||||
Sequence_name | C33F10.9 | ||||||||
Molecular_name | C33F10.9 | ||||||||
C33F10.9.1 | |||||||||
CE02806 | |||||||||
Other_name | CELE_C33F10.9 | Accession_evidence | NDB | BX284602 | |||||
Public_name | msp-40 | ||||||||
DB_info | Database | AceView | gene | 2F115 | |||||
WormQTL | gene | WBGene00003435 | |||||||
WormFlux | gene | WBGene00003435 | |||||||
NDB | locus_tag | CELE_C33F10.9 | |||||||
NCBI | gene | 173830 | |||||||
RefSeq | protein | NM_062464.8 | |||||||
SwissProt | UniProtAcc | P53017 | |||||||
UniProt_GCRP | UniProtAcc | P53017 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:31 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | msp | ||||||||
Allele (11) | |||||||||
Legacy_information | [C.elegansII] NMK. Encodes MSP (16kD); msp-3 cluster. [Ward et al. (1988); BA] | ||||||||
Strain | WBStrain00051002 | ||||||||
RNASeq_FPKM (74) | |||||||||
Ortholog (13) | |||||||||
Paralog (52) | |||||||||
Structured_description | Concise_description | msp-40 encodes a protein that belongs to a family of proteins called the Major Sperm Proteins (MSPs) that is conserved in nematodes; this family consists of closely related, small, basic proteins that make up 15% of sperm protein; this multigene family consists of over fifty genes, including many pseudogenes; MSPs are involved in both extracellular signaling and cytoskeletal functions during reproduction-MSP antagonizes Eph/ephrin signaling, in part, by binding VAB-1 Eph receptor tyrosine kinase on oocytes and sheath cells to promote oocyte maturation and MAPK activation; MSPs assemble into fibrous networks that drive movement of the C. elegans sperm; msp genes are expressed only in late primary spermatocytes. | Paper_evidence | WBPaper00001023 | |||||
WBPaper00002143 | |||||||||
WBPaper00004591 | |||||||||
WBPaper00005670 | |||||||||
Curator_confirmed | WBPerson324 | ||||||||
Date_last_updated | 31 Mar 2005 00:00:00 | ||||||||
Automated_description | Expressed in gonad; oocyte; and sperm. Is predicted to encode a protein with the following domains: Major sperm protein (MSP) domain; MSP (Major sperm protein) domain; PapD-like superfamily; and Immunoglobulin-like fold. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | C33F10.9 | |||||||
Corresponding_transcript | C33F10.9.1 | ||||||||
Other_sequence | MI05833 | ||||||||
EV850223.1 | |||||||||
GW407225.1 | |||||||||
BE588197.1 | |||||||||
MIC05147_1 | |||||||||
DA00415 | |||||||||
DVC01420_1 | |||||||||
BMC03962_1 | |||||||||
CJC04090_2 | |||||||||
CR02945 | |||||||||
Associated_feature | WBsf221184 | ||||||||
Experimental_info | RNAi_result (17) | ||||||||
Expr_pattern | Expr3417 | ||||||||
Expr1010325 | |||||||||
Expr1145800 | |||||||||
Expr2013776 | |||||||||
Expr2032015 | |||||||||
Drives_construct | WBCnstr00036118 | ||||||||
Construct_product | WBCnstr00036118 | ||||||||
Antibody | WBAntibody00000037 | ||||||||
WBAntibody00000038 | |||||||||
WBAntibody00000854 | |||||||||
WBAntibody00000855 | |||||||||
WBAntibody00000856 | |||||||||
WBAntibody00000857 | |||||||||
WBAntibody00000858 | |||||||||
Microarray_results (14) | |||||||||
Expression_cluster (231) | |||||||||
Interaction (226) | |||||||||
Map_info | Map | II | Position | -3.01029 | Error | 0.003527 | |||
Positive | Positive_clone | C33F10 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference | WBPaper00001023 | ||||||||
WBPaper00015440 | |||||||||
WBPaper00024312 | |||||||||
WBPaper00025088 | |||||||||
WBPaper00041549 | |||||||||
WBPaper00057218 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |