WormBase Tree Display for Gene: WBGene00003429

WBGene00003429 SMap: S_parent: Sequence: R05F9
  Identity: Version: 1
    Name: CGC_name: msp-31 Person_evidence: WBPerson680
      Sequence_name: R05F9.13
      Molecular_name: R05F9.13
        R05F9.13.1
        CE02806
      Other_name: CELE_R05F9.13 Accession_evidence: NDB BX284602
      Public_name: msp-31
    DB_info: Database: AceView gene 2F208
        WormQTL gene WBGene00003429
        WormFlux gene WBGene00003429
        NDB locus_tag CELE_R05F9.13
        NCBI gene 173849
        RefSeq protein NM_062497.6
        SwissProt UniProtAcc P53017
        UniProt_GCRP UniProtAcc P53017
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:31 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: msp
    Allele: WBVar01499702
      WBVar01498435
      WBVar00365083
      WBVar00365084
      WBVar00728877
    Legacy_information: [C.elegansII] NMK. Encodes MSP (16kD); msp-152 cluster. [Ward et al. (1988); BA]
    RNASeq_FPKM (74)
    Ortholog: WBGene00138554 Caenorhabditis japonica From_analysis: TreeFam
      WBGene00055436 Caenorhabditis remanei From_analysis: TreeFam
      WBGene00177110 Caenorhabditis japonica From_analysis: TreeFam
            WormBase-Compara
      CBOVI.g6681 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g14718 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP28.g19236 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP28.g4187 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP28.g4198 Caenorhabditis panamensis From_analysis: WormBase-Compara
      Pan_g8411 Panagrellus redivivus From_analysis: WormBase-Compara
      WBGene00294468 Trichuris muris From_analysis: WormBase-Compara
    Paralog (49)
    Structured_description: Concise_description: msp-31 encodes a member of the major sperm protein family; msp-31 has a C. briggsae homolog as predicted by the Wobble Aware Bulk Aligner (WABA); expression is enriched in sperm. Paper_evidence: WBPaper00004280
            WBPaper00004349
          Curator_confirmed: WBPerson48
            WBPerson324
          Date_last_updated: 06 May 2005 00:00:00
      Automated_description: Expressed in gonad; oocyte; and sperm. Is predicted to encode a protein with the following domains: Major sperm protein (MSP) domain; MSP (Major sperm protein) domain; PapD-like superfamily; and Immunoglobulin-like fold. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: R05F9.13
    Corresponding_transcript: R05F9.13.1
    Other_sequence (15)
    Associated_feature: WBsf222975
  Experimental_info: RNAi_result (24)
    Expr_pattern: Expr3417
      Expr1031589
      Expr1155006
      Expr2032009
    Drives_construct: WBCnstr00036123
    Construct_product: WBCnstr00036123
    Antibody: WBAntibody00000037
      WBAntibody00000038
      WBAntibody00000854
      WBAntibody00000855
      WBAntibody00000856
      WBAntibody00000857
      WBAntibody00000858
    Microarray_results (23)
    Expression_cluster (211)
    Interaction (207)
  Map_info: Map: II Position: -2.9184 Error: 0.003712
    Positive: Positive_clone: R05F9 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00001023
    WBPaper00004349
    WBPaper00015440
    WBPaper00024312
    WBPaper00025088
    WBPaper00057218
  Remark: Map II position -3
    Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene