WormBase Tree Display for Gene: WBGene00003442
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| WBGene00003442 | SMap | S_parent | Sequence | C34F11 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | msp-49 | Person_evidence | WBPerson680 | |||||
| Sequence_name | C34F11.6 | ||||||||
| Molecular_name | C34F11.6 | ||||||||
| C34F11.6.1 | |||||||||
| CE04166 | |||||||||
| Other_name | CELE_C34F11.6 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | msp-49 | ||||||||
| DB_info | Database | AceView | gene | 2F485 | |||||
| WormQTL | gene | WBGene00003442 | |||||||
| WormFlux | gene | WBGene00003442 | |||||||
| NDB | locus_tag | CELE_C34F11.6 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00003442|UniProtKB=Q18461 | |||||||
| family | PTHR22920 | ||||||||
| NCBI | gene | 173888 | |||||||
| RefSeq | protein | NM_001381414.1 | |||||||
| SwissProt | UniProtAcc | Q18461 | |||||||
| UniProt_GCRP | UniProtAcc | Q18461 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:31 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | msp | ||||||||
| Allele | WBVar01499702 | ||||||||
| WBVar01498435 | |||||||||
| WBVar02124677 | |||||||||
| WBVar00730600 | |||||||||
| WBVar01305997 | |||||||||
| WBVar02122540 | |||||||||
| WBVar00365657 | |||||||||
| WBVar00365658 | |||||||||
| WBVar00365659 | |||||||||
| WBVar00365660 | |||||||||
| Legacy_information | [C.elegansII] NMK. Encodes MSP (16kD); msp-45 cluster. [Ward et al. (1988); BA] | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00061295 | ||||||||
| 00061296 | |||||||||
| 00061297 | |||||||||
| 00061298 | |||||||||
| 00061299 | |||||||||
| Ortholog (30) | |||||||||
| Paralog (50) | |||||||||
| Structured_description | Concise_description | msp-49 encodes a protein that belongs to a family of proteins called the Major Sperm Proteins (MSPs) that is conserved in nematodes; this family consists of closely related, small, basic proteins that make up 15% of sperm protein; this multigene family consists of over fifty genes, including many pseudogenes; MSPs are involved in both extracellular signaling and cytoskeletal functions during reproduction-MSP antagonizes Eph/ephrin signaling, in part, by binding VAB-1 Eph receptor tyrosine kinase on oocytes and sheath cells to promote oocyte maturation and MAPK activation; MSPs assemble into fibrous networks that drive movement of the C. elegans sperm; msp genes are expressed only in late primary spermatocytes. | Paper_evidence | WBPaper00001023 | |||||
| WBPaper00002143 | |||||||||
| WBPaper00004591 | |||||||||
| WBPaper00005670 | |||||||||
| Curator_confirmed | WBPerson324 | ||||||||
| Date_last_updated | 31 Mar 2005 00:00:00 | ||||||||
| Automated_description | Predicted to be located in cytoplasm; cytoskeleton; and pseudopodium. Expressed in gonad; oocyte; and sperm. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C34F11.6 | |||||||
| Corresponding_transcript | C34F11.6.1 | ||||||||
| Other_sequence (99) | |||||||||
| Associated_feature | WBsf716984 | ||||||||
| WBsf987814 | |||||||||
| WBsf221241 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00029540 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00092860 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00041913 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00011619 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00059507 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr3417 | ||||||||
| Expr1010178 | |||||||||
| Expr1145920 | |||||||||
| Expr2013778 | |||||||||
| Expr2032017 | |||||||||
| Drives_construct | WBCnstr00036116 | ||||||||
| Construct_product | WBCnstr00036116 | ||||||||
| Antibody | WBAntibody00000037 | ||||||||
| WBAntibody00000038 | |||||||||
| WBAntibody00000854 | |||||||||
| WBAntibody00000855 | |||||||||
| WBAntibody00000856 | |||||||||
| WBAntibody00000857 | |||||||||
| WBAntibody00000858 | |||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (259) | |||||||||
| Interaction (196) | |||||||||
| Map_info | Map | II | Position | -1.94205 | Error | 0.002852 | |||
| Positive | Positive_clone | C34F11 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00001023 | ||||||||
| WBPaper00024312 | |||||||||
| WBPaper00040308 | |||||||||
| WBPaper00041549 | |||||||||
| WBPaper00057218 | |||||||||
| WBPaper00064502 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
