WormBase Tree Display for Gene: WBGene00003448
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| WBGene00003448 | SMap | S_parent | Sequence | C09B9 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | msp-55 | Person_evidence | WBPerson680 | |||||
| Sequence_name | C09B9.6 | ||||||||
| Molecular_name | C09B9.6 | ||||||||
| C09B9.6.1 | |||||||||
| CE06798 | |||||||||
| Other_name | CELE_C09B9.6 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | msp-55 | ||||||||
| DB_info | Database | AceView | gene | 4F820 | |||||
| WormQTL | gene | WBGene00003448 | |||||||
| WormFlux | gene | WBGene00003448 | |||||||
| NDB | locus_tag | CELE_C09B9.6 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00003448|UniProtKB=Q17856 | |||||||
| family | PTHR22920 | ||||||||
| NCBI | gene | 177272 | |||||||
| RefSeq | protein | NM_068310.8 | |||||||
| SwissProt | UniProtAcc | Q17856 | |||||||
| UniProt_GCRP | UniProtAcc | Q17856 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:31 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | msp | ||||||||
| Allele | WBVar00908525 | ||||||||
| WBVar00908526 | |||||||||
| WBVar00908527 | |||||||||
| WBVar00908528 | |||||||||
| WBVar01499754 | |||||||||
| WBVar01499242 | |||||||||
| WBVar01499633 | |||||||||
| WBVar00424556 | |||||||||
| WBVar01500245 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00059448 | ||||||||
| 00059449 | |||||||||
| 00059450 | |||||||||
| 00059451 | |||||||||
| 00059452 | |||||||||
| Ortholog (34) | |||||||||
| Paralog (50) | |||||||||
| Structured_description | Concise_description | msp-55 encodes a member of the major sperm protein family. | Paper_evidence | WBPaper00001023 | |||||
| WBPaper00003113 | |||||||||
| Curator_confirmed | WBPerson48 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to be located in cytoplasm; cytoskeleton; and pseudopodium. Expressed in gonad; oocyte; and sperm. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C09B9.6 | |||||||
| Corresponding_transcript | C09B9.6.1 | ||||||||
| Other_sequence | EL889537.1 | ||||||||
| CBC04310_2 | |||||||||
| CR00677 | |||||||||
| GW409715.1 | |||||||||
| Associated_feature | WBsf996418 | ||||||||
| WBsf996419 | |||||||||
| WBsf1017325 | |||||||||
| WBsf230044 | |||||||||
| Experimental_info | RNAi_result (19) | ||||||||
| Expr_pattern | Expr3417 | ||||||||
| Expr1022272 | |||||||||
| Expr1144244 | |||||||||
| Expr2013782 | |||||||||
| Expr2032021 | |||||||||
| Drives_construct | WBCnstr00036112 | ||||||||
| Construct_product | WBCnstr00036112 | ||||||||
| Antibody | WBAntibody00000037 | ||||||||
| WBAntibody00000038 | |||||||||
| WBAntibody00000854 | |||||||||
| WBAntibody00000855 | |||||||||
| WBAntibody00000856 | |||||||||
| WBAntibody00000857 | |||||||||
| WBAntibody00000858 | |||||||||
| Microarray_results (29) | |||||||||
| Expression_cluster (245) | |||||||||
| Interaction (219) | |||||||||
| Map_info | Map | IV | Position | 1.42852 | Error | 0.000444 | |||
| Positive | Positive_clone | C09B9 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00001023 | ||||||||
| WBPaper00003113 | |||||||||
| WBPaper00024312 | |||||||||
| WBPaper00040308 | |||||||||
| WBPaper00057218 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
