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WormBase Tree Display for Gene: WBGene00003448

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Name Class

WBGene00003448SMapS_parentSequenceC09B9
IdentityVersion1
NameCGC_namemsp-55Person_evidenceWBPerson680
Sequence_nameC09B9.6
Molecular_nameC09B9.6
C09B9.6.1
CE06798
Other_nameCELE_C09B9.6Accession_evidenceNDBBX284604
Public_namemsp-55
DB_infoDatabaseAceViewgene4F820
WormQTLgeneWBGene00003448
WormFluxgeneWBGene00003448
NDBlocus_tagCELE_C09B9.6
PanthergeneCAEEL|WormBase=WBGene00003448|UniProtKB=Q17856
familyPTHR22920
NCBIgene177272
RefSeqproteinNM_068310.8
SwissProtUniProtAccQ17856
UniProt_GCRPUniProtAccQ17856
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:31WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classmsp
AlleleWBVar00908525
WBVar00908526
WBVar00908527
WBVar00908528
WBVar01499754
WBVar01499242
WBVar01499633
WBVar00424556
WBVar01500245
RNASeq_FPKM (74)
GO_annotation00059448
00059449
00059450
00059451
00059452
OrthologWBGene00025773Caenorhabditis briggsaeFrom_analysisOMA
WBGene00025765Caenorhabditis briggsaeFrom_analysisOMA
WBGene00025845Caenorhabditis briggsaeFrom_analysisOMA
WBGene00033145Caenorhabditis briggsaeFrom_analysisOMA
WBGene00039559Caenorhabditis briggsaeFrom_analysisOMA
WBGene00041778Caenorhabditis briggsaeFrom_analysisOMA
WBGene00071513Caenorhabditis remaneiFrom_analysisOMA
WBGene00065352Caenorhabditis remaneiFrom_analysisOMA
WBGene00058086Caenorhabditis remaneiFrom_analysisOMA
WBGene00058089Caenorhabditis remaneiFrom_analysisOMA
WormBase-Compara
WBGene00055436Caenorhabditis remaneiFrom_analysisOMA
WormBase-Compara
WBGene00053449Caenorhabditis remaneiFrom_analysisOMA
WBGene00090532Pristionchus pacificusFrom_analysisOMA
Inparanoid_8
WBGene00128922Caenorhabditis japonicaFrom_analysisOMA
Inparanoid_8
WBGene00160133Caenorhabditis brenneriFrom_analysisOMA
WBGene00148031Caenorhabditis brenneriFrom_analysisOMA
WBGene00138554Caenorhabditis japonicaFrom_analysisTreeFam
WBGene00062101Caenorhabditis remaneiFrom_analysisTreeFam
WBGene00177110Caenorhabditis japonicaFrom_analysisTreeFam
WormBase-Compara
WBGene00097381Pristionchus pacificusFrom_analysisInparanoid_8
WBGene00099404Pristionchus pacificusFrom_analysisInparanoid_8
WBGene00097975Pristionchus pacificusFrom_analysisOMA
CBOVI.g6681Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g14718Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP28.g19236Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP28.g4187Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP28.g4198Caenorhabditis panamensisFrom_analysisWormBase-Compara
Csp11.Scaffold629.g15121Caenorhabditis tropicalisFrom_analysisWormBase-Compara
GCK72_010628Caenorhabditis remaneiFrom_analysisWormBase-Compara
Pan_g8411Panagrellus redivivusFrom_analysisWormBase-Compara
chrIV_pilon.g10344Caenorhabditis elegansFrom_analysisWormBase-Compara
chrIV_pilon.g10346Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00062121Caenorhabditis remaneiFrom_analysisWormBase-Compara
WBGene00294468Trichuris murisFrom_analysisWormBase-Compara
Paralog (50)
Structured_descriptionConcise_descriptionmsp-55 encodes a member of the major sperm protein family.Paper_evidenceWBPaper00001023
WBPaper00003113
Curator_confirmedWBPerson48
Date_last_updated17 Jun 2004 00:00:00
Automated_descriptionPredicted to be located in cytoplasm; cytoskeleton; and pseudopodium. Expressed in gonad; oocyte; and sperm.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSC09B9.6
Corresponding_transcriptC09B9.6.1
Other_sequenceEL889537.1
CBC04310_2
CR00677
GW409715.1
Associated_featureWBsf996418
WBsf996419
WBsf1017325
WBsf230044
Experimental_infoRNAi_result (19)
Expr_patternExpr3417
Expr1022272
Expr1144244
Expr2013782
Expr2032021
Drives_constructWBCnstr00036112
Construct_productWBCnstr00036112
AntibodyWBAntibody00000037
WBAntibody00000038
WBAntibody00000854
WBAntibody00000855
WBAntibody00000856
WBAntibody00000857
WBAntibody00000858
Microarray_results (29)
Expression_cluster (245)
Interaction (219)
Map_infoMapIVPosition1.42852Error0.000444
PositivePositive_cloneC09B9Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00001023
WBPaper00003113
WBPaper00024312
WBPaper00040308
WBPaper00057218
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene