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WormBase Tree Display for Gene: WBGene00003448

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Name Class

WBGene00003448SMapS_parentSequenceC09B9
IdentityVersion1
NameCGC_namemsp-55Person_evidenceWBPerson680
Sequence_nameC09B9.6
Molecular_nameC09B9.6
C09B9.6.1
CE06798
Other_nameCELE_C09B9.6Accession_evidenceNDBBX284604
Public_namemsp-55
DB_infoDatabaseAceViewgene4F820
WormQTLgeneWBGene00003448
WormFluxgeneWBGene00003448
NDBlocus_tagCELE_C09B9.6
PanthergeneCAEEL|WormBase=WBGene00003448|UniProtKB=Q17856
familyPTHR22920
NCBIgene177272
RefSeqproteinNM_068310.8
SwissProtUniProtAccQ17856
UniProt_GCRPUniProtAccQ17856
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:31WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classmsp
AlleleWBVar00908525
WBVar00908526
WBVar00908527
WBVar00908528
WBVar01499754
WBVar01499242
WBVar01499633
WBVar00424556
WBVar01500245
RNASeq_FPKM (74)
GO_annotation00059448
00059449
00059450
00059451
00059452
Ortholog (34)
ParalogWBGene00003424Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
Panther
WormBase-Compara
WBGene00003425Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
Panther
WormBase-Compara
WBGene00003426Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
Panther
WormBase-Compara
WBGene00003429Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
WBGene00003430Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
Panther
WormBase-Compara
WBGene00003431Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
Panther
WormBase-Compara
WBGene00003432Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
WBGene00003434Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
Panther
WormBase-Compara
WBGene00003435Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
WBGene00003438Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
WBGene00003442Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
Panther
WormBase-Compara
WBGene00003443Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
WBGene00003444Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
WBGene00003446Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
WBGene00003469Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
WBGene00018008
WBGene00003470Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
Panther
WormBase-Compara
WBGene00021997Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
Panther
WormBase-Compara
WBGene00003464Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
Panther
WormBase-Compara
WBGene00022760Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
WBGene00003450Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
WBGene00013773Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00003456Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
Panther
WormBase-Compara
WBGene00022005Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
Panther
WormBase-Compara
WBGene00013777Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00003449Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
WBGene00003463Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
WBGene00003465Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
Panther
WormBase-Compara
WBGene00044805Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
WBGene00003457Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
WBGene00018840Caenorhabditis elegansFrom_analysisTreeFam
WBGene00003452Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
WBGene00003458Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
WBGene00022002Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
WBGene00003467Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
WBGene00003466Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
WBGene00022546Caenorhabditis elegansFrom_analysisTreeFam
WBGene00003451Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00016082Caenorhabditis elegansFrom_analysisPanther
WBGene00022884Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00013658Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00003462Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00013047Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00010951Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00003468Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00007987Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00015215Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00019026Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00020416Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00022875Caenorhabditis elegansFrom_analysisWormBase-Compara
Structured_descriptionConcise_descriptionmsp-55 encodes a member of the major sperm protein family.Paper_evidenceWBPaper00001023
WBPaper00003113
Curator_confirmedWBPerson48
Date_last_updated17 Jun 2004 00:00:00
Automated_descriptionPredicted to be located in cytoplasm; cytoskeleton; and pseudopodium. Expressed in gonad; oocyte; and sperm.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSC09B9.6
Corresponding_transcriptC09B9.6.1
Other_sequenceEL889537.1
CBC04310_2
CR00677
GW409715.1
Associated_featureWBsf996418
WBsf996419
WBsf1017325
WBsf230044
Experimental_infoRNAi_result (19)
Expr_patternExpr3417
Expr1022272
Expr1144244
Expr2013782
Expr2032021
Drives_constructWBCnstr00036112
Construct_productWBCnstr00036112
AntibodyWBAntibody00000037
WBAntibody00000038
WBAntibody00000854
WBAntibody00000855
WBAntibody00000856
WBAntibody00000857
WBAntibody00000858
Microarray_results (29)
Expression_cluster (245)
Interaction (219)
Map_infoMapIVPosition1.42852Error0.000444
PositivePositive_cloneC09B9Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00001023
WBPaper00003113
WBPaper00024312
WBPaper00040308
WBPaper00057218
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene