WormBase Tree Display for Gene: WBGene00003449
expand all nodes | collapse all nodes | view schema
| WBGene00003449 | SMap | S_parent | Sequence | K07F5 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | msp-56 | Person_evidence | WBPerson680 | |||||
| Sequence_name | K07F5.3 | ||||||||
| Molecular_name | K07F5.3 | ||||||||
| K07F5.3.1 | |||||||||
| CE03853 | |||||||||
| Other_name | CELE_K07F5.3 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | msp-56 | ||||||||
| DB_info | Database | AceView | gene | 4K607 | |||||
| WormQTL | gene | WBGene00003449 | |||||||
| WormFlux | gene | WBGene00003449 | |||||||
| NDB | locus_tag | CELE_K07F5.3 | |||||||
| NCBI | gene | 177830 | |||||||
| RefSeq | protein | NM_069361.7 | |||||||
| SwissProt | UniProtAcc | P05634 | |||||||
| UniProt_GCRP | UniProtAcc | P05634 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:31 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | msp | ||||||||
| Allele | WBVar01500079 | ||||||||
| WBVar01498996 | |||||||||
| WBVar01499925 | |||||||||
| WBVar01499770 | |||||||||
| WBVar01499771 | |||||||||
| WBVar02123820 | |||||||||
| WBVar00245500 | |||||||||
| WBVar01500038 | |||||||||
| WBVar01500039 | |||||||||
| WBVar01500245 | |||||||||
| Legacy_information | Cluster of four genes including msp-56 msp-10 (transcribed). | ||||||||
| [C.elegansII] NMK. Encodes MSP (16kD); sequenced. Defines msp-56 cluster (three genes). [Ward et al. (1988); BA] | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (94) | |||||||||
| Paralog (49) | |||||||||
| Structured_description | Concise_description | msp-56 encodes a protein that belongs to a family of proteins called the Major Sperm Proteins (MSPs) that is conserved in nematodes; this family consists of closely related, small, basic proteins that make up 15% of sperm protein; this multigene family consists of over fifty genes, including many pseudogenes; MSPs are involved in both extracellular signaling and cytoskeletal functions during reproduction-MSP antagonizes Eph/ephrin signaling, in part, by binding VAB-1 Eph receptor tyrosine kinase on oocytes and sheath cells to promote oocyte maturation and MAPK activation; MSPs assemble into fibrous networks that drive movement of the C. elegans sperm; msp genes are expressed only in late primary spermatocytes. | Paper_evidence | WBPaper00001023 | |||||
| WBPaper00002143 | |||||||||
| WBPaper00004591 | |||||||||
| WBPaper00005670 | |||||||||
| Curator_confirmed | WBPerson324 | ||||||||
| Date_last_updated | 31 Mar 2005 00:00:00 | ||||||||
| Automated_description | Expressed in gonad; oocyte; and sperm. Is predicted to encode a protein with the following domains: Major sperm protein (MSP) domain; MSP (Major sperm protein) domain; PapD-like superfamily; and Immunoglobulin-like fold. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | K07F5.3 | |||||||
| Corresponding_transcript | K07F5.3.1 | ||||||||
| Other_sequence (46) | |||||||||
| Associated_feature | WBsf997485 | ||||||||
| WBsf228884 | |||||||||
| Experimental_info | RNAi_result (22) | ||||||||
| Expr_pattern | Expr3417 | ||||||||
| Expr1153884 | |||||||||
| Expr2013783 | |||||||||
| Expr2032022 | |||||||||
| Drives_construct | WBCnstr00005292 | ||||||||
| WBCnstr00036111 | |||||||||
| Construct_product | WBCnstr00036111 | ||||||||
| Antibody | WBAntibody00000037 | ||||||||
| WBAntibody00000038 | |||||||||
| WBAntibody00000854 | |||||||||
| WBAntibody00000855 | |||||||||
| WBAntibody00000856 | |||||||||
| WBAntibody00000857 | |||||||||
| WBAntibody00000858 | |||||||||
| Microarray_results | SMD_K07F5.3 | ||||||||
| A_12_P120255 | |||||||||
| A_12_P146520 | |||||||||
| GPL19516_CGZ0011710 | |||||||||
| GPL21109_Cat_K07F5.3 | |||||||||
| GPL8673_K07F5_3P00022 | |||||||||
| GPL9450_K07F5.3 | |||||||||
| cea2.d.32754 | |||||||||
| Expression_cluster (191) | |||||||||
| Interaction (207) | |||||||||
| Map_info | Map | IV | Position | 4.43243 | Error | 0.000423 | |||
| Positive | Positive_clone | BA#K4H | |||||||
| K07F5 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00001023 | ||||||||
| WBPaper00001024 | |||||||||
| WBPaper00024312 | |||||||||
| WBPaper00032220 | |||||||||
| WBPaper00057218 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
