WormBase Tree Display for Variation: WBVar00245500
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| WBVar00245500 | Evidence | Paper_evidence | WBPaper00004703 | ||
|---|---|---|---|---|---|
| Name | Public_name | WBVar00245500 | |||
| Other_name | snp_K07F5[3] | ||||
| K07F5.3.1:c.342A>T | |||||
| CE03853:p.Gly114= | |||||
| HGVSg | CHROMOSOME_IV:g.9841881A>T | ||||
| Sequence_details | SMap | S_parent | Sequence | K07F5 | |
| Flanking_sequences | atgcgccatacgatgacaagcacacctaccacatcaaggtgatcaactcatcggctcgtcgtattggatatggtatcaagaccaccaatatgaagagacttggagttgatccaccatgtggagttctcgacccaaaggaagctgtgcttcttgctgtttcctgcgatgcttttgccttcggacaagaggataccaacaacgaccgtatcactgttgagtggaccaacaccccggatggcgctgccaaacaattccgtcgtgaatggttccagggagacgg | atggttcgtcgcaagaaccttccaattgagtacaacccatagagccttta | |||
| Mapping_target | K07F5 | ||||
| Type_of_mutation | Substitution | A | T | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| RFLP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00004602 | From_analysis | SNP_Wicks | ||
| Analysis | SNP_Wicks | ||||
| Status | Live | ||||
| Affects | Gene | WBGene00003449 | |||
| Transcript | K07F5.3.1 | VEP_consequence | synonymous_variant | ||
| VEP_impact | LOW | ||||
| HGVSc | K07F5.3.1:c.342A>T | ||||
| HGVSp | CE03853:p.Gly114= | ||||
| cDNA_position | 342 | ||||
| CDS_position | 342 | ||||
| Protein_position | 114 | ||||
| Exon_number | 1/1 | ||||
| Codon_change | ggA/ggT | ||||
| Amino_acid_change | G | ||||
| Reference | WBPaper00004703 | ||||
| Remark | Predicted SNP: Psnp=0.7699 VarS=AT | ||||
| Enzymes. SNP detectable only by sequencing. | |||||
| [20040130 db] this Locus was previously named snp_K07F5.3 | |||||
| [20040130 db] this Allele was previously named snp_K07F5.3 | |||||
| [20090224 db] original Wicks name : K07F5:8012..8949@183 Psnp=0.7699 VarS=AT | |||||
| [20090224 db] original Wicks id : eam59g02.s1@107,t,34 | |||||
| [20090224 db] Snip-SNP | |||||
| Method | SNP_Wicks |
