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WormBase Tree Display for Gene: WBGene00003449

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Name Class

WBGene00003449SMapS_parentSequenceK07F5
IdentityVersion1
NameCGC_namemsp-56Person_evidenceWBPerson680
Sequence_nameK07F5.3
Molecular_nameK07F5.3
K07F5.3.1
CE03853
Other_nameCELE_K07F5.3Accession_evidenceNDBBX284604
Public_namemsp-56
DB_infoDatabaseAceViewgene4K607
WormQTLgeneWBGene00003449
WormFluxgeneWBGene00003449
NDBlocus_tagCELE_K07F5.3
NCBIgene177830
RefSeqproteinNM_069361.7
SwissProtUniProtAccP05634
UniProt_GCRPUniProtAccP05634
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:31WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classmsp
AlleleWBVar01500079
WBVar01498996
WBVar01499925
WBVar01499770
WBVar01499771
WBVar02123820
WBVar00245500
WBVar01500038
WBVar01500039
WBVar01500245
Legacy_informationCluster of four genes including msp-56 msp-10 (transcribed).
[C.elegansII] NMK. Encodes MSP (16kD); sequenced. Defines msp-56 cluster (three genes). [Ward et al. (1988); BA]
RNASeq_FPKM (74)
OrthologWBGene00025846Caenorhabditis briggsaeFrom_analysisOrthoMCL
WBGene00192070Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00192131Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00152579Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00159718Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00191634Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00191599Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00148031Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00185107Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00162010Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00192932Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00191471Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00160133Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00206643Caenorhabditis japonicaFrom_analysisTreeFam
WBGene00127088Caenorhabditis japonicaFrom_analysisTreeFam
WBGene00211455Caenorhabditis japonicaFrom_analysisTreeFam
WBGene00218547Caenorhabditis japonicaFrom_analysisTreeFam
WBGene00134125Caenorhabditis japonicaFrom_analysisTreeFam
WBGene00125190Caenorhabditis japonicaFrom_analysisTreeFam
WBGene00125308Caenorhabditis japonicaFrom_analysisTreeFam
WBGene00126180Caenorhabditis japonicaFrom_analysisTreeFam
WBGene00127065Caenorhabditis japonicaFrom_analysisTreeFam
WBGene00214099Caenorhabditis japonicaFrom_analysisTreeFam
WBGene00219102Caenorhabditis japonicaFrom_analysisTreeFam
WBGene00119530Caenorhabditis japonicaFrom_analysisTreeFam
WBGene00123861Caenorhabditis japonicaFrom_analysisTreeFam
WBGene00216706Caenorhabditis japonicaFrom_analysisTreeFam
WBGene00216776Caenorhabditis japonicaFrom_analysisTreeFam
WBGene00121184Caenorhabditis japonicaFrom_analysisTreeFam
WBGene00210888Caenorhabditis japonicaFrom_analysisTreeFam
WBGene00134026Caenorhabditis japonicaFrom_analysisTreeFam
WBGene00213948Caenorhabditis japonicaFrom_analysisTreeFam
WBGene00133477Caenorhabditis japonicaFrom_analysisTreeFam
WBGene00130292Caenorhabditis japonicaFrom_analysisTreeFam
WBGene00212729Caenorhabditis japonicaFrom_analysisTreeFam
WBGene00217314Caenorhabditis japonicaFrom_analysisTreeFam
WBGene00218156Caenorhabditis japonicaFrom_analysisTreeFam
WBGene00120428Caenorhabditis japonicaFrom_analysisTreeFam
WBGene00217440Caenorhabditis japonicaFrom_analysisTreeFam
WBGene00123671Caenorhabditis japonicaFrom_analysisTreeFam
WBGene00207814Caenorhabditis japonicaFrom_analysisTreeFam
WBGene00129871Caenorhabditis japonicaFrom_analysisTreeFam
WBGene00129817Caenorhabditis japonicaFrom_analysisTreeFam
WBGene00124170Caenorhabditis japonicaFrom_analysisTreeFam
WBGene00133313Caenorhabditis japonicaFrom_analysisTreeFam
WBGene00213014Caenorhabditis japonicaFrom_analysisTreeFam
WBGene00210316Caenorhabditis japonicaFrom_analysisTreeFam
WBGene00136177Caenorhabditis japonicaFrom_analysisTreeFam
WBGene00134954Caenorhabditis japonicaFrom_analysisTreeFam
WBGene00124973Caenorhabditis japonicaFrom_analysisTreeFam
WBGene00206785Caenorhabditis japonicaFrom_analysisTreeFam
WBGene00125293Caenorhabditis japonicaFrom_analysisTreeFam
WBGene00120888Caenorhabditis japonicaFrom_analysisTreeFam
WBGene00131374Caenorhabditis japonicaFrom_analysisTreeFam
WBGene00215039Caenorhabditis japonicaFrom_analysisTreeFam
WBGene00128922Caenorhabditis japonicaFrom_analysisTreeFam
WBGene00127848Caenorhabditis japonicaFrom_analysisTreeFam
WBGene00124716Caenorhabditis japonicaFrom_analysisTreeFam
WBGene00206708Caenorhabditis japonicaFrom_analysisTreeFam
WBGene00123492Caenorhabditis japonicaFrom_analysisTreeFam
WBGene00213605Caenorhabditis japonicaFrom_analysisTreeFam
WBGene00131872Caenorhabditis japonicaFrom_analysisTreeFam
WBGene00209793Caenorhabditis japonicaFrom_analysisTreeFam
WBGene00126456Caenorhabditis japonicaFrom_analysisTreeFam
WBGene00178810Caenorhabditis japonicaFrom_analysisTreeFam
WBGene00129479Caenorhabditis japonicaFrom_analysisTreeFam
WBGene00208374Caenorhabditis japonicaFrom_analysisTreeFam
WBGene00134910Caenorhabditis japonicaFrom_analysisTreeFam
WBGene00132637Caenorhabditis japonicaFrom_analysisTreeFam
WBGene00136866Caenorhabditis japonicaFrom_analysisTreeFam
WBGene00125704Caenorhabditis japonicaFrom_analysisTreeFam
WBGene00211461Caenorhabditis japonicaFrom_analysisTreeFam
WBGene00212277Caenorhabditis japonicaFrom_analysisTreeFam
WBGene00218314Caenorhabditis japonicaFrom_analysisTreeFam
WBGene00217054Caenorhabditis japonicaFrom_analysisTreeFam
WBGene00131805Caenorhabditis japonicaFrom_analysisTreeFam
WBGene00053678Caenorhabditis remaneiFrom_analysisTreeFam
WBGene00061475Caenorhabditis remaneiFrom_analysisTreeFam
WormBase-Compara
WBGene00057473Caenorhabditis remaneiFrom_analysisTreeFam
WBGene00057314Caenorhabditis remaneiFrom_analysisTreeFam
WBGene00062836Caenorhabditis remaneiFrom_analysisTreeFam
WBGene00071513Caenorhabditis remaneiFrom_analysisTreeFam
WBGene00052439Caenorhabditis remaneiFrom_analysisTreeFam
WBGene00064752Caenorhabditis remaneiFrom_analysisTreeFam
WBGene00085099Caenorhabditis remaneiFrom_analysisTreeFam
WBGene00211135Caenorhabditis japonicaFrom_analysisTreeFam
WBGene00087012Caenorhabditis briggsaeFrom_analysisWormBase-Compara
CBOVI.g7034Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g14718Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g6855Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP32.g17660Caenorhabditis sulstoniFrom_analysisWormBase-Compara
GCK72_018201Caenorhabditis remaneiFrom_analysisWormBase-Compara
Pan_g8411Panagrellus redivivusFrom_analysisWormBase-Compara
WBGene00294468Trichuris murisFrom_analysisWormBase-Compara
Paralog (49)
Structured_descriptionConcise_descriptionmsp-56 encodes a protein that belongs to a family of proteins called the Major Sperm Proteins (MSPs) that is conserved in nematodes; this family consists of closely related, small, basic proteins that make up 15% of sperm protein; this multigene family consists of over fifty genes, including many pseudogenes; MSPs are involved in both extracellular signaling and cytoskeletal functions during reproduction-MSP antagonizes Eph/ephrin signaling, in part, by binding VAB-1 Eph receptor tyrosine kinase on oocytes and sheath cells to promote oocyte maturation and MAPK activation; MSPs assemble into fibrous networks that drive movement of the C. elegans sperm; msp genes are expressed only in late primary spermatocytes.Paper_evidenceWBPaper00001023
WBPaper00002143
WBPaper00004591
WBPaper00005670
Curator_confirmedWBPerson324
Date_last_updated31 Mar 2005 00:00:00
Automated_descriptionExpressed in gonad; oocyte; and sperm. Is predicted to encode a protein with the following domains: Major sperm protein (MSP) domain; MSP (Major sperm protein) domain; PapD-like superfamily; and Immunoglobulin-like fold.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSK07F5.3
Corresponding_transcriptK07F5.3.1
Other_sequence (46)
Associated_featureWBsf997485
WBsf228884
Experimental_infoRNAi_result (22)
Expr_patternExpr3417
Expr1153884
Expr2013783
Expr2032022
Drives_constructWBCnstr00005292
WBCnstr00036111
Construct_productWBCnstr00036111
AntibodyWBAntibody00000037
WBAntibody00000038
WBAntibody00000854
WBAntibody00000855
WBAntibody00000856
WBAntibody00000857
WBAntibody00000858
Microarray_resultsSMD_K07F5.3
A_12_P120255
A_12_P146520
GPL19516_CGZ0011710
GPL21109_Cat_K07F5.3
GPL8673_K07F5_3P00022
GPL9450_K07F5.3
cea2.d.32754
Expression_cluster (191)
Interaction (207)
Map_infoMapIVPosition4.43243Error0.000423
PositivePositive_cloneBA#K4H
K07F5Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00001023
WBPaper00001024
WBPaper00024312
WBPaper00032220
WBPaper00057218
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene