WormBase Tree Display for Gene: WBGene00003469
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| WBGene00003469 | SMap | S_parent | Sequence | K05F1 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | msp-142 | Person_evidence | WBPerson680 | |||||
| Sequence_name | K05F1.2 | ||||||||
| Molecular_name | K05F1.2 | ||||||||
| K05F1.2.1 | |||||||||
| CE02806 | |||||||||
| Other_name | CELE_K05F1.2 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | msp-142 | ||||||||
| DB_info | Database | AceView | gene | 2G89 | |||||
| WormQTL | gene | WBGene00003469 | |||||||
| WormFlux | gene | WBGene00003469 | |||||||
| NDB | locus_tag | CELE_K05F1.2 | |||||||
| NCBI | gene | 173981 | |||||||
| RefSeq | protein | NM_062743.6 | |||||||
| SwissProt | UniProtAcc | P53017 | |||||||
| UniProt_GCRP | UniProtAcc | P53017 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:32 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | msp | ||||||||
| Allele (14) | |||||||||
| Legacy_information | Cluster of two genes four pseudogenes including msp-142 (transcribed). | ||||||||
| [C.elegansII] NMK. Encodes MSP (16kD). Defines cluster of two genes, four pseudogenes including msp-142 (transcribed). [Ward et al. (1988); BA] | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (34) | |||||||||
| Paralog (49) | |||||||||
| Structured_description | Concise_description | msp-142 encodes a protein that belongs to a family of proteins called the Major Sperm Proteins (MSPs) that is conserved in nematodes; this family consists of closely related, small, basic proteins that make up 15% of sperm protein; this multigene family consists of over fifty genes, including many pseudogenes; MSPs are involved in both extracellular signaling and cytoskeletal functions during reproduction-MSP antagonizes Eph/ephrin signaling, in part, by binding VAB-1 Eph receptor tyrosine kinase on oocytes and sheath cells to promote oocyte maturation and MAPK activation; MSPs assemble into fibrous networks that drive movement of the C. elegans sperm; msp genes are expressed only in late primary spermatocytes. | Paper_evidence | WBPaper00001023 | |||||
| WBPaper00002143 | |||||||||
| WBPaper00004591 | |||||||||
| WBPaper00005670 | |||||||||
| Curator_confirmed | WBPerson324 | ||||||||
| Date_last_updated | 31 Mar 2005 00:00:00 | ||||||||
| Automated_description | Expressed in gonad; oocyte; and sperm. Is predicted to encode a protein with the following domains: Major sperm protein (MSP) domain; MSP (Major sperm protein) domain; PapD-like superfamily; and Immunoglobulin-like fold. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | K05F1.2 | |||||||
| Corresponding_transcript | K05F1.2.1 | ||||||||
| Other_sequence (355) | |||||||||
| Associated_feature | WBsf221344 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00033989 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00049989 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00059194 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00021849 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00059192 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr3417 | ||||||||
| Expr1022410 | |||||||||
| Expr1153684 | |||||||||
| Expr2013770 | |||||||||
| Expr2032006 | |||||||||
| Drives_construct | WBCnstr00036098 | ||||||||
| Construct_product | WBCnstr00005246 | ||||||||
| WBCnstr00022850 | |||||||||
| WBCnstr00036098 | |||||||||
| Antibody | WBAntibody00000037 | ||||||||
| WBAntibody00000038 | |||||||||
| WBAntibody00000854 | |||||||||
| WBAntibody00000855 | |||||||||
| WBAntibody00000856 | |||||||||
| WBAntibody00000857 | |||||||||
| WBAntibody00000858 | |||||||||
| Microarray_results (15) | |||||||||
| Expression_cluster (229) | |||||||||
| Interaction (200) | |||||||||
| Map_info | Map | II | Position | -0.923359 | Error | 0.001298 | |||
| Positive | Positive_clone | BA#62 | |||||||
| K05F1 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00001023 | ||||||||
| WBPaper00001024 | |||||||||
| WBPaper00001209 | |||||||||
| WBPaper00003113 | |||||||||
| WBPaper00004591 | |||||||||
| WBPaper00015440 | |||||||||
| WBPaper00024312 | |||||||||
| WBPaper00032220 | |||||||||
| WBPaper00064850 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
