WormBase Tree Display for Gene: WBGene00017576
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| WBGene00017576 | SMap | S_parent | Sequence | CHROMOSOME_IV | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | cdh-8 | Person_evidence | WBPerson698 | |||||
| Sequence_name | F18F11.3 | ||||||||
| Molecular_name (27) | |||||||||
| Other_name | CELE_F18F11.3 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | cdh-8 | ||||||||
| DB_info | Database | AceView | gene | 4B111 | |||||
| WormQTL | gene | WBGene00017576 | |||||||
| WormFlux | gene | WBGene00017576 | |||||||
| NDB | locus_tag | CELE_F18F11.3 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00017576|UniProtKB=U4PM66 | |||||||
| family | PTHR24026 | ||||||||
| NCBI | gene | 184652 | |||||||
| RefSeq | protein | NM_001307480.3 | |||||||
| NM_001307486.4 | |||||||||
| NM_001307430.3 | |||||||||
| NM_001307487.3 | |||||||||
| NM_001307483.3 | |||||||||
| NM_001307481.3 | |||||||||
| NM_001307484.3 | |||||||||
| NM_001307485.3 | |||||||||
| NM_001307482.3 | |||||||||
| TrEMBL | UniProtAcc | U4PBD1 | |||||||
| U4PEK5 | |||||||||
| U4PBI3 | |||||||||
| U4PEL1 | |||||||||
| U4PBR0 | |||||||||
| U4PM66 | |||||||||
| U4PBR4 | |||||||||
| U4PBD6 | |||||||||
| U4PRG1 | |||||||||
| UniProt_GCRP | UniProtAcc | U4PM66 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:59 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 19 Oct 2005 17:52:08 | WBPerson1867 | Event | Acquires_merge | WBGene00000400 | ||||
| Acquires_merge | WBGene00000400 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | cdh | ||||||||
| Allele (209) | |||||||||
| Strain | WBStrain00031528 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00104971 | ||||||||
| 00104972 | |||||||||
| 00104973 | |||||||||
| 00104974 | |||||||||
| 00105059 | |||||||||
| 00122924 | |||||||||
| 00122925 | |||||||||
| 00122926 | |||||||||
| Ortholog (30) | |||||||||
| Paralog | WBGene00001475 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WBGene00001980 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00022103 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00000395 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00000396 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00000397 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00000399 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00000401 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00000402 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00019994 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Concise_description | cdh-8 encodes a cadherin that may be nematode specific; CDH-8 is predicted to function as a membrane protein that plays a role in cell adhesion and/or morphogenesis, but as loss of cdh-8 activity via mutation or large-scale RNAi experiments results in no obvious abnormalities, the precise role of cdh-8 in C. elegans development and/or behavior is not yet known. | Paper_evidence | WBPaper00004508 | |||||
| WBPaper00005654 | |||||||||
| WBPaper00013424 | |||||||||
| WBPaper00025054 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 09 Aug 2006 00:00:00 | ||||||||
| Automated_description | Predicted to enable calcium ion binding activity. Predicted to be involved in cell-cell adhesion. Predicted to be located in plasma membrane. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F18F11.3a | |||||||
| F18F11.3b | |||||||||
| F18F11.3c | |||||||||
| F18F11.3d | |||||||||
| F18F11.3e | |||||||||
| F18F11.3f | |||||||||
| F18F11.3g | |||||||||
| F18F11.3h | |||||||||
| F18F11.3i | |||||||||
| Corresponding_CDS_history | F18F11.3:wp138 | ||||||||
| Corresponding_transcript | F18F11.3a.1 | ||||||||
| F18F11.3b.1 | |||||||||
| F18F11.3c.1 | |||||||||
| F18F11.3d.1 | |||||||||
| F18F11.3e.1 | |||||||||
| F18F11.3f.1 | |||||||||
| F18F11.3g.1 | |||||||||
| F18F11.3h.1 | |||||||||
| F18F11.3i.1 | |||||||||
| Other_sequence | JI251688.1 | ||||||||
| Tcol_isotig19609 | |||||||||
| GO240170.1 | |||||||||
| CJC07964_1 | |||||||||
| Associated_feature (11) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00044964 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00021256 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00013523 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00057962 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00013522 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1019871 | ||||||||
| Expr1037548 | |||||||||
| Expr1148933 | |||||||||
| Expr2009804 | |||||||||
| Expr2028045 | |||||||||
| Drives_construct | WBCnstr00027194 | ||||||||
| Construct_product | WBCnstr00027194 | ||||||||
| Microarray_results (39) | |||||||||
| Expression_cluster (143) | |||||||||
| Interaction | WBInteraction000260252 | ||||||||
| WBInteraction000286273 | |||||||||
| WBInteraction000303796 | |||||||||
| WBInteraction000313612 | |||||||||
| WBInteraction000351359 | |||||||||
| WBInteraction000352851 | |||||||||
| WBInteraction000445411 | |||||||||
| WBInteraction000585377 | |||||||||
| Map_info | Map | IV | Position | -26.4471 | Error | 0.029965 | |||
| Positive | Positive_clone | F18F11 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 5537 | |||||||
| 4691 | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00004508 | ||||||||
| WBPaper00013424 | |||||||||
| WBPaper00018119 | |||||||||
| WBPaper00027233 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00053755 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00058555 | |||||||||
| WBPaper00060859 | |||||||||
| WBPaper00064138 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
