WormBase Tree Display for Gene: WBGene00022103

WBGene00022103 SMap: S_parent: Sequence: CHROMOSOME_III
  Identity: Version: 3
    Name: CGC_name: cdh-12 Person_evidence: WBPerson698
      Sequence_name: Y71D11A.1
      Molecular_name: Y71D11A.1a
        Y71D11A.1a.1
        CE53242
        Y71D11A.1b
        CE53391
        Y71D11A.1b.1
      Other_name: Y92C3A.b Curator_confirmed: WBPerson1983
          Remark: Old cosmid naming mapped via unique overlapping PCR_product on CDSs
        Y92C3A.c Curator_confirmed: WBPerson1983
          Remark: Old cosmid naming mapped via unique overlapping PCR_product on CDSs
        Y92C3A.e Curator_confirmed: WBPerson1983
          Remark: Old cosmid naming mapped via unique overlapping PCR_product on CDSs
        CELE_Y71D11A.1 Accession_evidence: NDB BX284603
      Public_name: cdh-12
    DB_info: Database: AceView gene 3C269
        WormQTL gene WBGene00022103
        WormFlux gene WBGene00022103
        NDB locus_tag CELE_Y71D11A.1
        Panther gene CAEEL|WormBase=WBGene00022103|UniProtKB=K8F801
          family PTHR24026
        NCBI gene 190583
        RefSeq protein NM_001373846.2
            NM_001373847.2
        TrEMBL UniProtAcc A0A4V0IJU8
            A0A4V6M3X3
        UniProt_GCRP UniProtAcc A0A4V6M3X3
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:31:05 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 19 Oct 2005 17:56:47 WBPerson1867 Event: Acquires_merge: WBGene00000404
        3 20 Oct 2005 09:09:01 WBPerson1867 Event: Acquires_merge: WBGene00022355
      Acquires_merge: WBGene00000404
        WBGene00022355
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: cdh
    Allele (818)
    Strain: WBStrain00032839
    RNASeq_FPKM (74)
    GO_annotation: 00003782
      00003783
      00003784
      00003785
      00126280
      00126281
      00126282
      00126283
    Ortholog (22)
    Paralog: WBGene00001475 Caenorhabditis elegans From_analysis: Panther
      WBGene00001980 Caenorhabditis elegans From_analysis: Panther
      WBGene00017576 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00000395 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00000396 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00000397 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00000399 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00000401 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00000402 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00019994 Caenorhabditis elegans From_analysis: WormBase-Compara
    Structured_description: Concise_description: cdh-12 encodes a cadherin; by sequence similarity, CDH-12 is predicted to function in cellular adhesion. Paper_evidence: WBPaper00004508
            WBPaper00005654
            WBPaper00024497
            WBPaper00025054
          Curator_confirmed: WBPerson1843
          Date_last_updated: 26 Apr 2012 00:00:00
      Automated_description: Predicted to enable calcium ion binding activity. Predicted to be involved in cell-cell adhesion. Predicted to be located in membrane. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: Y71D11A.1a
      Y71D11A.1b
    Corresponding_CDS_history: Y71D11A.1:wp138
      Y71D11A.1:wp216
      Y71D11A.1:wp234
      Y71D11A.1:wp271
    Corresponding_transcript: Y71D11A.1a.1
      Y71D11A.1b.1
    Other_sequence (139)
    Associated_feature: WBsf658601
      WBsf991237
      WBsf991238
      WBsf991239
      WBsf991240
      WBsf991241
      WBsf991242
      WBsf1014186
  Experimental_info: RNAi_result: WBRNAi00020001 Inferred_automatically: RNAi_primary
      WBRNAi00058621 Inferred_automatically: RNAi_primary
      WBRNAi00058139 Inferred_automatically: RNAi_primary
      WBRNAi00037914 Inferred_automatically: RNAi_primary
      WBRNAi00019994 Inferred_automatically: RNAi_primary
      WBRNAi00065252 Inferred_automatically: RNAi_primary
      WBRNAi00058620 Inferred_automatically: RNAi_primary
      WBRNAi00019992 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1012002
      Expr1039722
      Expr1161564
      Expr2009799
      Expr2028039
    Microarray_results (40)
    Expression_cluster (248)
    Interaction (12)
  Map_info: Map: III Position: -22.6639 Error: 0.009974
    Positive: Positive_clone: Y71D11A Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference (11)
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene