WormBase Tree Display for Gene: WBGene00000402
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| WBGene00000402 | SMap | S_parent | Sequence | C45G7 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 4 | |||||||
| Name | CGC_name | cdh-10 | Person_evidence | WBPerson698 | |||||
| Sequence_name | C45G7.5 | ||||||||
| Molecular_name | C45G7.5 | ||||||||
| C45G7.5.1 | |||||||||
| CE48895 | |||||||||
| Other_name | CELE_C45G7.5 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | cdh-10 | ||||||||
| DB_info | Database | AceView | gene | 4D204 | |||||
| WormQTL | gene | WBGene00000402 | |||||||
| WormFlux | gene | WBGene00000402 | |||||||
| NDB | locus_tag | CELE_C45G7.5 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00000402|UniProtKB=Q5F4U0 | |||||||
| family | PTHR24028 | ||||||||
| NCBI | gene | 183476 | |||||||
| RefSeq | protein | NM_067803.6 | |||||||
| TREEFAM | TREEFAM_ID | TF352007 | |||||||
| TrEMBL | UniProtAcc | Q5F4U0 | |||||||
| UniProt_GCRP | UniProtAcc | Q5F4U0 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:20 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 20 Oct 2005 08:59:18 | WBPerson1867 | Event | Acquires_merge | WBGene00016672 | ||||
| 3 | 20 Oct 2005 09:11:45 | WBPerson1867 | Event | Acquires_merge | WBGene00043063 | ||||
| 4 | 12 Sep 2013 15:53:01 | WBPerson4025 | Event | Split_into | WBGene00235340 | ||||
| Acquires_merge | WBGene00016672 | ||||||||
| WBGene00043063 | |||||||||
| Split_into | WBGene00235340 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | cdh | ||||||||
| Allele (664) | |||||||||
| Strain | WBStrain00032842 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00081297 | ||||||||
| 00081298 | |||||||||
| 00081299 | |||||||||
| 00081300 | |||||||||
| 00107338 | |||||||||
| 00107339 | |||||||||
| 00107340 | |||||||||
| Ortholog (88) | |||||||||
| Paralog | WBGene00000395 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00000396 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00000397 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00000399 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00000401 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00017576 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00019994 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00022103 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Concise_description | cdh-10 encodes a member of the cadherin superfamily. | Paper_evidence | WBPaper00004508 | |||||
| Curator_confirmed | WBPerson48 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable calcium ion binding activity. Predicted to be involved in cell adhesion. Predicted to be located in membrane. Expressed in K cell; K' cell; mc1; mc2; and seam cell. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C45G7.5 | |||||||
| Corresponding_CDS_history | C45G7.5:wp131 | ||||||||
| C45G7.5:wp138 | |||||||||
| C45G7.5:wp239 | |||||||||
| Corresponding_transcript | C45G7.5.1 | ||||||||
| Other_sequence (15) | |||||||||
| Associated_feature (11) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00011987 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00042542 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr154 | ||||||||
| Expr2013 | |||||||||
| Expr2726 | |||||||||
| Expr1021364 | |||||||||
| Expr1030220 | |||||||||
| Expr1146527 | |||||||||
| Expr2009798 | |||||||||
| Expr2028038 | |||||||||
| Drives_construct | WBCnstr00010921 | ||||||||
| Microarray_results (24) | |||||||||
| Expression_cluster (222) | |||||||||
| Interaction | WBInteraction000030031 | ||||||||
| WBInteraction000501611 | |||||||||
| WBInteraction000503109 | |||||||||
| Map_info | Map | IV | Position | -7.47388 | Error | 0.023949 | |||
| Positive | Positive_clone | C45G7 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00004508 | ||||||||
| WBPaper00013424 | |||||||||
| WBPaper00018119 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00058555 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
