WormBase Tree Display for Gene: WBGene00000401
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| WBGene00000401 | SMap | S_parent | Sequence | F59C12 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | cdh-9 | Person_evidence | WBPerson698 | |||||
| Sequence_name | F59C12.1 | ||||||||
| Molecular_name | F59C12.1a | ||||||||
| F59C12.1a.1 | |||||||||
| CE38081 | |||||||||
| F59C12.1b | |||||||||
| CE54265 | |||||||||
| F59C12.1b.1 | |||||||||
| Other_name | CELE_F59C12.1 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | cdh-9 | ||||||||
| DB_info | Database | AceView | gene | XR215 | |||||
| WormQTL | gene | WBGene00000401 | |||||||
| WormFlux | gene | WBGene00000401 | |||||||
| NDB | locus_tag | CELE_F59C12.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00000401|UniProtKB=Q21035 | |||||||
| family | PTHR24026 | ||||||||
| NCBI | gene | 186608 | |||||||
| RefSeq | protein | NM_078284.6 | |||||||
| NM_001392909.1 | |||||||||
| TrEMBL | UniProtAcc | A0A7R9SUP0 | |||||||
| Q21035 | |||||||||
| UniProt_GCRP | UniProtAcc | Q21035 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:20 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | cdh | ||||||||
| Allele (99) | |||||||||
| Strain | WBStrain00037905 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00070078 | ||||||||
| 00070079 | |||||||||
| 00070080 | |||||||||
| 00107335 | |||||||||
| 00107336 | |||||||||
| 00107337 | |||||||||
| Ortholog (42) | |||||||||
| Paralog | WBGene00000395 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
| WBGene00000396 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00000397 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00000399 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00000402 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00017576 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00019994 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00022103 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Concise_description | cdh-9 encodes a member of the cadherin superfamily of transmembrane glycoproteins that mediate homophilic cell-cell adhesion; as loss of CDH-9 activity via RNA-mediated interference (RNAi) does not result in any abnormalities, the precise role of CDH-9 in C. elegans development and/or behavior is not yet known. | Paper_evidence | WBPaper00004508 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable calcium ion binding activity. Predicted to be involved in homophilic cell adhesion via plasma membrane adhesion molecules. Predicted to be located in membrane. Is an ortholog of several human genes including PCDH1 (protocadherin 1); PCDH7 (protocadherin 7); and PCDH9 (protocadherin 9). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F59C12.1a | |||||||
| F59C12.1b | |||||||||
| Corresponding_CDS_history | F59C12.1:wp129 | ||||||||
| F59C12.1:wp138 | |||||||||
| Corresponding_transcript | F59C12.1a.1 | ||||||||
| F59C12.1b.1 | |||||||||
| Other_sequence | BMC03949_1 | ||||||||
| JI481587.1 | |||||||||
| Associated_feature (15) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00016085 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00049156 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1012736 | ||||||||
| Expr1030219 | |||||||||
| Expr1152899 | |||||||||
| Expr2009805 | |||||||||
| Expr2028046 | |||||||||
| Drives_construct | WBCnstr00037568 | ||||||||
| Construct_product | WBCnstr00037568 | ||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (167) | |||||||||
| Interaction | WBInteraction000373345 | ||||||||
| WBInteraction000559858 | |||||||||
| Map_info | Map | X | Position | 24.056 | |||||
| Positive | Positive_clone | F59C12 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00004508 | ||||||||
| WBPaper00011654 | |||||||||
| WBPaper00011812 | |||||||||
| WBPaper00013424 | |||||||||
| WBPaper00027233 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00058555 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
