WormBase Tree Display for Gene: WBGene00000397
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| WBGene00000397 | SMap | S_parent | Sequence | F08B4 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | cdh-5 | Person_evidence | WBPerson698 | |||||
| Sequence_name | F08B4.2 | ||||||||
| Molecular_name (12) | |||||||||
| Other_name | CELE_F08B4.2 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | cdh-5 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:20 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 26 Feb 2014 16:35:28 | WBPerson4025 | Event | Split_into | WBGene00255375 | ||||
| Split_into | WBGene00255375 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | cdh | ||||||||
| Allele (82) | |||||||||
| Strain | WBStrain00032300 | ||||||||
| WBStrain00000426 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00022207 | ||||||||
| 00022208 | |||||||||
| 00022209 | |||||||||
| 00022210 | |||||||||
| 00107328 | |||||||||
| 00107329 | |||||||||
| 00107330 | |||||||||
| Ortholog (44) | |||||||||
| Paralog | WBGene00000399 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00019994 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00000395 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00000396 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00000401 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00000402 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00017576 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00022103 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Concise_description | a homolog of cadherin. | Paper_evidence | WBPaper00004508 | |||||
| Curator_confirmed | WBPerson480 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable calcium ion binding activity. Predicted to be involved in cell-cell adhesion. Predicted to be located in membrane. Human ortholog(s) of this gene implicated in Usher syndrome type 1D; Usher syndrome type 1F; and autosomal recessive nonsyndromic deafness 23. Is an ortholog of human PCDH15 (protocadherin related 15). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0110832 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:14674) | ||||
| DOID:0110831 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:14674) | ||||||
| DOID:0110481 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:14674) | ||||||
| Molecular_info | Corresponding_CDS | F08B4.2a | |||||||
| F08B4.2b | |||||||||
| F08B4.2c | |||||||||
| F08B4.2d | |||||||||
| Corresponding_CDS_history | F08B4.2a:wp242 | ||||||||
| F08B4.2a:wp261 | |||||||||
| F08B4.2c:wp261 | |||||||||
| Corresponding_transcript | F08B4.2a.1 | ||||||||
| F08B4.2b.1 | |||||||||
| F08B4.2c.1 | |||||||||
| F08B4.2d.1 | |||||||||
| Other_sequence | JI465114.1 | ||||||||
| JI165597.1 | |||||||||
| JI472854.1 | |||||||||
| JI478310.1 | |||||||||
| BMC06462_1 | |||||||||
| Associated_feature | WBsf997263 | ||||||||
| WBsf1017874 | |||||||||
| WBsf228725 | |||||||||
| WBsf228726 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00012865 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00043966 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00000523 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1012101 | ||||||||
| Expr1030218 | |||||||||
| Expr1147941 | |||||||||
| Expr2009803 | |||||||||
| Expr2028043 | |||||||||
| Drives_construct | WBCnstr00037570 | ||||||||
| Construct_product | WBCnstr00037570 | ||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (257) | |||||||||
| Interaction | WBInteraction000151546 | ||||||||
| WBInteraction000170462 | |||||||||
| WBInteraction000275574 | |||||||||
| WBInteraction000368444 | |||||||||
| WBInteraction000399737 | |||||||||
| Map_info | Map | IV | Position | 3.92961 | Error | 0.000991 | |||
| Positive | Positive_clone | F08B4 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Mapping_data | Multi_point | 4874 | |||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00004508 | ||||||||
| WBPaper00013424 | |||||||||
| WBPaper00027233 | |||||||||
| WBPaper00032446 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00058371 | |||||||||
| WBPaper00058555 | |||||||||
| WBPaper00064495 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
