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WormBase Tree Display for Gene: WBGene00000397

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Name Class

WBGene00000397SMapS_parentSequenceF08B4
IdentityVersion2
NameCGC_namecdh-5Person_evidenceWBPerson698
Sequence_nameF08B4.2
Molecular_name (12)
Other_nameCELE_F08B4.2Accession_evidenceNDBBX284604
Public_namecdh-5
DB_infoDatabase (11)
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:20WBPerson1971EventImportedInitial conversion from geneace
226 Feb 2014 16:35:28WBPerson4025EventSplit_intoWBGene00255375
Split_intoWBGene00255375
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classcdh
Allele (82)
StrainWBStrain00032300
WBStrain00000426
RNASeq_FPKM (74)
GO_annotation00022207
00022208
00022209
00022210
00107328
00107329
00107330
OrthologWBGene00068426Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00042583Caenorhabditis briggsaeFrom_analysisOrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00120336Caenorhabditis japonicaFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00190652Caenorhabditis brenneriFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00192621Caenorhabditis brenneriFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00074631Caenorhabditis remaneiFrom_analysisTreeFam
WBGene00223441Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g10945Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g5116Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g8598Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g10253Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g3993Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g15739Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g17024Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g9124Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g2221Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g26778Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g5185Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g18787Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_20821.g26536Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-cdh-5Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold629.g12184Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp11.Scaffold629.g12187Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp11.Scaffold629.g12188Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00646.g13966Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_13085Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_015199Caenorhabditis remaneiFrom_analysisWormBase-Compara
GCK72_015200Caenorhabditis remaneiFrom_analysisWormBase-Compara
GCK72_015204Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g03198Oscheius tipulaeFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g03200Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g4694Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_40060700Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrIV_pilon.g11130Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00212368Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00241124Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00098466Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00267518Strongyloides rattiFrom_analysisWormBase-Compara
FB:FBgn0039709Drosophila melanogasterFrom_analysisHieranoid
Inparanoid
OrthoFinder
ZFIN:ZDB-GENE-030616-3Danio rerioFrom_analysisHieranoid
Inparanoid
OrthoFinder
ZFIN:ZDB-GENE-050214-1Danio rerioFrom_analysisHieranoid
Inparanoid
OrthoFinder
HGNC:14674Homo sapiensFrom_analysisHieranoid
Inparanoid
OrthoFinder
MGI:1891428Mus musculusFrom_analysisHieranoid
Inparanoid
OrthoFinder
RGD:1590969Rattus norvegicusFrom_analysisHieranoid
Inparanoid
OrthoFinder
ParalogWBGene00000399Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00019994Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00000395Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000396Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000401Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000402Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00017576Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00022103Caenorhabditis elegansFrom_analysisWormBase-Compara
Structured_descriptionConcise_descriptiona homolog of cadherin.Paper_evidenceWBPaper00004508
Curator_confirmedWBPerson480
Date_last_updated17 Jun 2004 00:00:00
Automated_descriptionPredicted to enable calcium ion binding activity. Predicted to be involved in cell-cell adhesion. Predicted to be located in membrane. Human ortholog(s) of this gene implicated in Usher syndrome type 1D; Usher syndrome type 1F; and autosomal recessive nonsyndromic deafness 23. Is an ortholog of human PCDH15 (protocadherin related 15).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Disease_infoPotential_modelDOID:0110832Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:14674)
DOID:0110831Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:14674)
DOID:0110481Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:14674)
Molecular_infoCorresponding_CDSF08B4.2a
F08B4.2b
F08B4.2c
F08B4.2d
Corresponding_CDS_historyF08B4.2a:wp242
F08B4.2a:wp261
F08B4.2c:wp261
Corresponding_transcriptF08B4.2a.1
F08B4.2b.1
F08B4.2c.1
F08B4.2d.1
Other_sequenceJI465114.1
JI165597.1
JI472854.1
JI478310.1
BMC06462_1
Associated_featureWBsf997263
WBsf1017874
WBsf228725
WBsf228726
Experimental_infoRNAi_resultWBRNAi00012865Inferred_automaticallyRNAi_primary
WBRNAi00043966Inferred_automaticallyRNAi_primary
WBRNAi00000523Inferred_automaticallyRNAi_primary
Expr_patternExpr1012101
Expr1030218
Expr1147941
Expr2009803
Expr2028043
Drives_constructWBCnstr00037570
Construct_productWBCnstr00037570
Microarray_results (18)
Expression_cluster (257)
InteractionWBInteraction000151546
WBInteraction000170462
WBInteraction000275574
WBInteraction000368444
WBInteraction000399737
Map_infoMapIVPosition3.92961Error0.000991
PositivePositive_cloneF08B4Inferred_automaticallyFrom CDS info
From sequence, transcript, pseudogene data
Mapping_dataMulti_point4874
Pseudo_map_position
ReferenceWBPaper00004508
WBPaper00013424
WBPaper00027233
WBPaper00032446
WBPaper00038491
WBPaper00055090
WBPaper00058371
WBPaper00058555
WBPaper00064495
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene