WormBase Tree Display for Gene: WBGene00000395
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| WBGene00000395 | SMap | S_parent | Sequence | ZK112 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | cdh-3 | Person_evidence | WBPerson698 | |||||
| Sequence_name | ZK112.7 | ||||||||
| Molecular_name | ZK112.7 | ||||||||
| ZK112.7.1 | |||||||||
| CE50490 | |||||||||
| Other_name | CELE_ZK112.7 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | cdh-3 | ||||||||
| DB_info | Database | AceView | gene | 3I832 | |||||
| WormQTL | gene | WBGene00000395 | |||||||
| WormFlux | gene | WBGene00000395 | |||||||
| NDB | locus_tag | CELE_ZK112.7 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00000395|UniProtKB=P34616 | |||||||
| family | PTHR24028 | ||||||||
| NCBI | gene | 176085 | |||||||
| RefSeq | protein | NM_066286.6 | |||||||
| SwissProt | UniProtAcc | P34616 | |||||||
| UniProt_GCRP | UniProtAcc | P34616 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:20 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | cdh | ||||||||
| Allele (171) | |||||||||
| Legacy_information | [Pettitt J, Wood WB] Encodes a cadherin-related protein. 10kb transcript detected on Northern blots, in late-stage embryo and L1 larval RNA. lac-Z driven by a 5 kb promoter fragment results in lac-Z expression in seam cells in comma-stage through to 3-fold embryos. A few other as yet unidentified hypodermal cells also stain in the anterior. | ||||||||
| Strain | WBStrain00026516 | ||||||||
| WBStrain00030884 | |||||||||
| WBStrain00030896 | |||||||||
| WBStrain00030900 | |||||||||
| WBStrain00040717 | |||||||||
| WBStrain00028923 | |||||||||
| WBStrain00028943 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (22) | |||||||||
| Ortholog (23) | |||||||||
| Paralog | WBGene00019994 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| WormBase-Compara | |||||||||
| WBGene00000396 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| WormBase-Compara | |||||||||
| WBGene00000402 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00000397 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00000399 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00000401 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00017576 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00022103 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Concise_description | cdh-3 encodes a member of the cadherin superfamily that affects morphogenesis of tail epithelia and excretory function; expressed predominantly in developing epithelial cells, and also expressed in the AC, excretory cell, various neurons, and vulval cells during different stages of development. | Paper_evidence | WBPaper00002636 | |||||
| WBPaper00011717 | |||||||||
| WBPaper00017629 | |||||||||
| Curator_confirmed | WBPerson48 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable structural molecule activity. Involved in basement membrane disassembly and nematode male tail tip morphogenesis. Located in basement membrane; cytoplasm; and plasma membrane. Expressed in several structures, including HSN; VC neuron; anchor cell; epithelial cell; and ventral nerve cord. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | ZK112.7 | |||||||
| Corresponding_CDS_history | ZK112.7:wp246 | ||||||||
| Corresponding_transcript | ZK112.7.1 | ||||||||
| Other_sequence | Tcir_isotig12995 | ||||||||
| Associated_feature | WBsf667100 | ||||||||
| WBsf667101 | |||||||||
| WBsf993126 | |||||||||
| WBsf993127 | |||||||||
| WBsf993128 | |||||||||
| WBsf993129 | |||||||||
| WBsf1015302 | |||||||||
| WBsf1015303 | |||||||||
| WBsf1015304 | |||||||||
| WBsf227018 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00021816 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00059125 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00107682 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00005441 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern (16) | |||||||||
| Drives_construct (63) | |||||||||
| Construct_product | WBCnstr00001679 | ||||||||
| WBCnstr00006510 | |||||||||
| WBCnstr00006511 | |||||||||
| WBCnstr00015725 | |||||||||
| WBCnstr00015726 | |||||||||
| WBCnstr00015727 | |||||||||
| WBCnstr00015730 | |||||||||
| WBCnstr00037572 | |||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (176) | |||||||||
| Interaction (48) | |||||||||
| Map_info | Map | III | Position | -0.618657 | Error | 0.003852 | |||
| Positive | Positive_clone | ZK112 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 4191 | |||||||
| 5266 | |||||||||
| Pseudo_map_position | |||||||||
| Reference (66) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
