WormBase Tree Display for Gene: WBGene00000397
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WBGene00000397 | SMap | S_parent | Sequence | F08B4 | |||
---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||
Name | CGC_name | cdh-5 | Person_evidence | WBPerson698 | |||
Sequence_name | F08B4.2 | ||||||
Molecular_name (12) | |||||||
Other_name | CELE_F08B4.2 | Accession_evidence | NDB | BX284604 | |||
Public_name | cdh-5 | ||||||
DB_info | Database (11) | ||||||
Species | Caenorhabditis elegans | ||||||
History | Version_change (2) | ||||||
Split_into | WBGene00255375 | ||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | cdh | ||||||
Allele (82) | |||||||
Strain | WBStrain00032300 | ||||||
WBStrain00000426 | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation | 00022207 | ||||||
00022208 | |||||||
00022209 | |||||||
00022210 | |||||||
00107328 | |||||||
00107329 | |||||||
00107330 | |||||||
Ortholog (44) | |||||||
Paralog | WBGene00000399 | Caenorhabditis elegans | From_analysis | Panther | |||
WormBase-Compara | |||||||
WBGene00019994 | Caenorhabditis elegans | From_analysis | Panther | ||||
WormBase-Compara | |||||||
WBGene00000395 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
WBGene00000396 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
WBGene00000401 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
WBGene00000402 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
WBGene00017576 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
WBGene00022103 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
Structured_description | Concise_description | a homolog of cadherin. | Paper_evidence | WBPaper00004508 | |||
Curator_confirmed | WBPerson480 | ||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||
Automated_description | Predicted to enable calcium ion binding activity. Predicted to be involved in cell-cell adhesion. Predicted to be located in membrane. Human ortholog(s) of this gene implicated in Usher syndrome type 1D; Usher syndrome type 1F; and autosomal recessive nonsyndromic deafness 23. Is an ortholog of human PCDH15 (protocadherin related 15). | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Disease_info | Potential_model | DOID:0110832 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:14674) | ||
DOID:0110831 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:14674) | ||||
DOID:0110481 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:14674) | ||||
Molecular_info | Corresponding_CDS | F08B4.2a | |||||
F08B4.2b | |||||||
F08B4.2c | |||||||
F08B4.2d | |||||||
Corresponding_CDS_history | F08B4.2a:wp242 | ||||||
F08B4.2a:wp261 | |||||||
F08B4.2c:wp261 | |||||||
Corresponding_transcript | F08B4.2a.1 | ||||||
F08B4.2b.1 | |||||||
F08B4.2c.1 | |||||||
F08B4.2d.1 | |||||||
Other_sequence | JI465114.1 | ||||||
JI165597.1 | |||||||
JI472854.1 | |||||||
JI478310.1 | |||||||
BMC06462_1 | |||||||
Associated_feature | WBsf997263 | ||||||
WBsf1017874 | |||||||
WBsf228725 | |||||||
WBsf228726 | |||||||
Experimental_info | RNAi_result | WBRNAi00012865 | Inferred_automatically | RNAi_primary | |||
WBRNAi00043966 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00000523 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr1012101 | ||||||
Expr1030218 | |||||||
Expr1147941 | |||||||
Expr2009803 | |||||||
Expr2028043 | |||||||
Drives_construct | WBCnstr00037570 | ||||||
Construct_product | WBCnstr00037570 | ||||||
Microarray_results (18) | |||||||
Expression_cluster (257) | |||||||
Interaction | WBInteraction000151546 | ||||||
WBInteraction000170462 | |||||||
WBInteraction000275574 | |||||||
WBInteraction000368444 | |||||||
WBInteraction000399737 | |||||||
Map_info | Map | IV | Position | 3.92961 | Error | 0.000991 | |
Positive | Positive_clone | F08B4 | Inferred_automatically | From CDS info | |||
From sequence, transcript, pseudogene data | |||||||
Mapping_data | Multi_point | 4874 | |||||
Pseudo_map_position | |||||||
Reference | WBPaper00004508 | ||||||
WBPaper00013424 | |||||||
WBPaper00027233 | |||||||
WBPaper00032446 | |||||||
WBPaper00038491 | |||||||
WBPaper00055090 | |||||||
WBPaper00058371 | |||||||
WBPaper00058555 | |||||||
WBPaper00064495 | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |