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WormBase Tree Display for Gene: WBGene00000402

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Name Class

WBGene00000402SMapS_parentSequenceC45G7
IdentityVersion4
NameCGC_namecdh-10Person_evidenceWBPerson698
Sequence_nameC45G7.5
Molecular_nameC45G7.5
C45G7.5.1
CE48895
Other_nameCELE_C45G7.5Accession_evidenceNDBBX284604
Public_namecdh-10
DB_infoDatabaseAceViewgene4D204
WormQTLgeneWBGene00000402
WormFluxgeneWBGene00000402
NDBlocus_tagCELE_C45G7.5
PanthergeneCAEEL|WormBase=WBGene00000402|UniProtKB=Q5F4U0
familyPTHR24028
NCBIgene183476
RefSeqproteinNM_067803.6
TREEFAMTREEFAM_IDTF352007
TrEMBLUniProtAccQ5F4U0
UniProt_GCRPUniProtAccQ5F4U0
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:20WBPerson1971EventImportedInitial conversion from geneace
220 Oct 2005 08:59:18WBPerson1867EventAcquires_mergeWBGene00016672
320 Oct 2005 09:11:45WBPerson1867EventAcquires_mergeWBGene00043063
412 Sep 2013 15:53:01WBPerson4025EventSplit_intoWBGene00235340
Acquires_mergeWBGene00016672
WBGene00043063
Split_intoWBGene00235340
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classcdh
Allele (664)
StrainWBStrain00032842
RNASeq_FPKM (74)
GO_annotation00081297
00081298
00081299
00081300
00107338
00107339
00107340
OrthologWBGene00068362Caenorhabditis remaneiFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00041052Caenorhabditis briggsaeFrom_analysisOrthoMCL
Inparanoid_8
WormBase-Compara
WBGene00148388Caenorhabditis brenneriFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
CBOVI.g8203Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g6680Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g21375Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g2469Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g2194Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g13668Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g17951Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g15196Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g22820Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g9902Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g16027Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00191.g6644Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_01686.g16657Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_09431.g22061Caenorhabditis angariaFrom_analysisWormBase-Compara
Cnig_chr_IV.g16088Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold629.g10730Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_03198.g29401Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_11723Caenorhabditis latensFrom_analysisWormBase-Compara
Sp34_40032900Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrIV_pilon.g9805Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00179353Caenorhabditis japonicaFrom_analysisWormBase-Compara
nigoni.pc_2016.07.11_075.g29046Caenorhabditis nigoniFrom_analysisWormBase-Compara
WBGene00077211Caenorhabditis remaneiFrom_analysisWormBase-Compara
MGI:1298406Mus musculusFrom_analysisInparanoid
Panther
MGI:1298367Mus musculusFrom_analysisInparanoid
Panther
MGI:1298369Mus musculusFrom_analysisInparanoid
Panther
MGI:1298371Mus musculusFrom_analysisInparanoid
Panther
MGI:1298372Mus musculusFrom_analysisInparanoid
Panther
MGI:1298408Mus musculusFrom_analysisInparanoid
Panther
MGI:1338042Mus musculusFrom_analysisInparanoid
Panther
MGI:1306800Mus musculusFrom_analysisInparanoid
Panther
MGI:1855700Mus musculusFrom_analysisInparanoid
Panther
MGI:1920423Mus musculusFrom_analysisInparanoid
Panther
MGI:1935169Mus musculusFrom_analysisInparanoid
Panther
MGI:1935170Mus musculusFrom_analysisInparanoid
Panther
MGI:1935173Mus musculusFrom_analysisInparanoid
Panther
MGI:1935196Mus musculusFrom_analysisInparanoid
Panther
MGI:1935197Mus musculusFrom_analysisInparanoid
Panther
MGI:1935199Mus musculusFrom_analysisInparanoid
Panther
MGI:1935201Mus musculusFrom_analysisInparanoid
Panther
MGI:1935203Mus musculusFrom_analysisInparanoid
Panther
MGI:1935205Mus musculusFrom_analysisInparanoid
Panther
MGI:1935212Mus musculusFrom_analysisInparanoid
Panther
MGI:1935214Mus musculusFrom_analysisInparanoid
Panther
MGI:1935215Mus musculusFrom_analysisInparanoid
Panther
MGI:1935216Mus musculusFrom_analysisInparanoid
Panther
MGI:1935217Mus musculusFrom_analysisInparanoid
Panther
MGI:1935218Mus musculusFrom_analysisInparanoid
Panther
MGI:1935219Mus musculusFrom_analysisInparanoid
Panther
MGI:1935221Mus musculusFrom_analysisInparanoid
Panther
MGI:1935226Mus musculusFrom_analysisInparanoid
Panther
MGI:1935227Mus musculusFrom_analysisInparanoid
Panther
MGI:1935228Mus musculusFrom_analysisInparanoid
Panther
MGI:1935229Mus musculusFrom_analysisInparanoid
Panther
MGI:2136730Mus musculusFrom_analysisInparanoid
Panther
MGI:2136735Mus musculusFrom_analysisInparanoid
Panther
MGI:2136737Mus musculusFrom_analysisInparanoid
Panther
MGI:2136738Mus musculusFrom_analysisInparanoid
Panther
MGI:2136739Mus musculusFrom_analysisInparanoid
Panther
MGI:2136740Mus musculusFrom_analysisInparanoid
Panther
MGI:2136741Mus musculusFrom_analysisInparanoid
Panther
MGI:2136742Mus musculusFrom_analysisInparanoid
Panther
MGI:2136744Mus musculusFrom_analysisInparanoid
Panther
MGI:2136745Mus musculusFrom_analysisInparanoid
Panther
MGI:2136746Mus musculusFrom_analysisInparanoid
Panther
MGI:2136747Mus musculusFrom_analysisInparanoid
Panther
MGI:2136748Mus musculusFrom_analysisInparanoid
Panther
MGI:2136749Mus musculusFrom_analysisInparanoid
Panther
MGI:2136750Mus musculusFrom_analysisInparanoid
Panther
MGI:2136752Mus musculusFrom_analysisInparanoid
Panther
MGI:2136754Mus musculusFrom_analysisInparanoid
Panther
MGI:2136756Mus musculusFrom_analysisInparanoid
Panther
MGI:2136757Mus musculusFrom_analysisInparanoid
Panther
MGI:2136758Mus musculusFrom_analysisInparanoid
Panther
MGI:2136759Mus musculusFrom_analysisInparanoid
Panther
MGI:2136760Mus musculusFrom_analysisInparanoid
Panther
MGI:2150982Mus musculusFrom_analysisInparanoid
Panther
MGI:2447322Mus musculusFrom_analysisInparanoid
Panther
MGI:2447313Mus musculusFrom_analysisInparanoid
Panther
MGI:1298370Mus musculusFrom_analysisInparanoid
Panther
MGI:2681880Mus musculusFrom_analysisInparanoid
Panther
MGI:2681879Mus musculusFrom_analysisInparanoid
Panther
MGI:1891442Mus musculusFrom_analysisInparanoid
Panther
MGI:1891443Mus musculusFrom_analysisInparanoid
Panther
MGI:5610241Mus musculusFrom_analysisInparanoid
Panther
ParalogWBGene00000395Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00000396Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000397Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000399Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000401Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00017576Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00019994Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00022103Caenorhabditis elegansFrom_analysisWormBase-Compara
Structured_descriptionConcise_descriptioncdh-10 encodes a member of the cadherin superfamily.Paper_evidenceWBPaper00004508
Curator_confirmedWBPerson48
Date_last_updated17 Jun 2004 00:00:00
Automated_descriptionPredicted to enable calcium ion binding activity. Predicted to be involved in cell adhesion. Predicted to be located in membrane. Expressed in K cell; K' cell; mc1; mc2; and seam cell.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSC45G7.5
Corresponding_CDS_historyC45G7.5:wp131
C45G7.5:wp138
C45G7.5:wp239
Corresponding_transcriptC45G7.5.1
Other_sequence (15)
Associated_feature (11)
Experimental_infoRNAi_resultWBRNAi00011987Inferred_automaticallyRNAi_primary
WBRNAi00042542Inferred_automaticallyRNAi_primary
Expr_patternExpr154
Expr2013
Expr2726
Expr1021364
Expr1030220
Expr1146527
Expr2009798
Expr2028038
Drives_constructWBCnstr00010921
Microarray_results (24)
Expression_cluster (222)
InteractionWBInteraction000030031
WBInteraction000501611
WBInteraction000503109
Map_infoMapIVPosition-7.47388Error0.023949
PositivePositive_cloneC45G7Inferred_automaticallyFrom CDS info
From sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00004508
WBPaper00013424
WBPaper00018119
WBPaper00055090
WBPaper00058555
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene