WormBase Tree Display for Gene: WBGene00015232

WBGene00015232 SMap: S_parent: Sequence: B0511
  Identity: Version: 1
    Name: Sequence_name: B0511.6
      Molecular_name: B0511.6
        B0511.6.1
        CE26853
      Other_name: CELE_B0511.6 Accession_evidence: NDB BX284601
      Public_name: B0511.6
    DB_info: Database (12)
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:30:55 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
    Status: Live
  Gene_info: Biotype: SO:0001217
    Allele (27)
    Strain: WBStrain00037234
    RNASeq_FPKM (74)
    GO_annotation (14)
    Contained_in_operon: CEOP1628
    Ortholog (37)
    Paralog: WBGene00000479 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00001598 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00001599 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00001600 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00001601 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00001840 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00002083 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00002244 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00003507 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00003992 Caenorhabditis elegans From_analysis: Panther
      WBGene00006888 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00008119 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00010260 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00010280 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00011032 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00011580 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00012059 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00013214 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00013983 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00022148 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00018007 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00018890 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00019245 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00021277 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00021905 Caenorhabditis elegans From_analysis: Panther
      WBGene00022792 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00016073 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00022378 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00021938 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00022587 Caenorhabditis elegans From_analysis: Panther
      WBGene00017162 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00019219 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00018776 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00020284 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00018997 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00022029 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00021391 Caenorhabditis elegans From_analysis: WormBase-Compara
    Structured_description: Concise_description: B0511.6 encodes a DEAD-box helicase; loss of B0511.6 activity via RNAi indicates that B0511.6 activity is required for larval development. Paper_evidence: WBPaper00006395
            WBPaper00025054
            WBPaper00031057
          Curator_confirmed: WBPerson1843
          Date_last_updated: 09 Oct 2007 00:00:00
      Automated_description: Predicted to enable several functions, including ATP binding activity; ATP hydrolysis activity; and RNA helicase activity. Predicted to be involved in maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA). Predicted to be located in nucleolus. Expressed in head and tail. Is an ortholog of human DDX18 (DEAD-box helicase 18). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: B0511.6
    Corresponding_transcript: B0511.6.1
    Other_sequence (92)
    Associated_feature: WBsf034264
      WBsf656891
      WBsf218468
      WBsf218469
      WBsf218470
  Experimental_info: RNAi_result (13)
    Expr_pattern: Chronogram2048
      Expr5081
      Expr1019860
      Expr1036523
      Expr1143304
      Expr2000230
      Expr2018450
    Drives_construct: WBCnstr00002099
      WBCnstr00028985
    Construct_product: WBCnstr00028985
    Microarray_results (25)
    Expression_cluster: WBPaper00028451:Abundant_spermatogenesis_enriched
      WBPaper00029359_1280
      WBPaper00029359_1444
      WBPaper00029359_1504
      WBPaper00029359_1604
      WBPaper00031040:TGF-beta_adult_downregulated
      WBPaper00033065:cyc-1(RNAi)_upregulated
      WBPaper00038118:aak-2(gt33)_upregulated
      WBPaper00044656:tatn-1(qd182)_downregulated
      WBPaper00044736:flat_dev_expression
      WBPaper00044760:germline_specific
      WBPaper00045314:S.aureus-induced_N2
      WBPaper00046497:B.thuringiensis_0.1mix_upregulated_12h
      WBPaper00046497:B.thuringiensis_0.5mix_upregulated_12h
      WBPaper00049290:rsks-1(sv31)_downregulated
      WBPaper00049545:cco-1(RNAi)_downregulated
      WBPaper00049545:jmjd-3.1(+)_downregulated
      WBPaper00050686:glp-1(e2141)_downregulated
      WBPaper00050801:DPY-21_dauer_regulome
      WBPaper00050990:arcade_intestinal-valve_expressed
      WBPaper00050990:GABAergic-neuron_expressed
      WBPaper00050990:hypodermis_expressed
      WBPaper00050990:intestine_expressed
      WBPaper00050990:NMDA-neuron_expressed
      WBPaper00050990:seam_expressed
      WBPaper00051039:germline_enriched
      WBPaper00051245:body-wall-muscle_cytoplasm_expressed
      WBPaper00051245:body-wall-muscle_nucleus_expressed
      WBPaper00051245:epidermis_cytoplasm_expressed
      WBPaper00051245:epidermis_nucleus_expressed
      WBPaper00051245:intestine_cytoplasm_expressed
      WBPaper00051245:intestine_nucleus_expressed
      WBPaper00051245:nucleus_specific
      WBPaper00051245:pharyngeal-muscle_cytoplasm_expressed
      WBPaper00053184:sma-2(rax5)_upregulated
      WBPaper00053184:sma-4(rax3)_upregulated
      WBPaper00053302:stavudine_24h_regulated
      WBPaper00053302:zidovudine_72h_regulated
      WBPaper00053388:dauer_regulated_Cluster2
      WBPaper00053599:oocyte_vs_mitosis_upregulated
      WBPaper00053810:isp-1(qm150)_downregulated
      WBPaper00053810:nuo-6(qm200)_downregulated
      WBPaper00053814:25C_downregulated_OP50
      WBPaper00053814:25C_downregulated_PY79
      WBPaper00055354:Psora-Allantoin_upregulated
      WBPaper00055354:Rapamycin-Metformin_upregulated
      WBPaper00055354:Rapamycin-Rifampicin-Psora_upregulated
      WBPaper00055354:Rapamycin-Rifampicin_upregulated
      WBPaper00055354:Rifampicin-Allantoin_upregulated
      WBPaper00055354:Rifampicin-Psora_upregulated
      WBPaper00055354:Rifampicin_upregulated
      WBPaper00055648:germline_expressed
      WBPaper00055971:nhl-2(ok818)_25C_downregulated
      WBPaper00056034:pals-22(jy3)_downregulated
      WBPaper00056034:pals-25(jy9)_downregulated
      WBPaper00056139:soil-microbiota_upregulated
      WBPaper00056471:S.aureus-4h_upregulated_N2
      WBPaper00056826:SGP_biased
      WBPaper00057041:unc-70(cas983)_downregulated
      WBPaper00057288:Cold_downregulated_transcript
      WBPaper00057288:iff-1(RNAi)_downregulated_transcript
      WBPaper00058691:cfp-1(tm6369)_downregulated
      WBPaper00058691:sin-3(tm1276)_downregulated
      WBPaper00060014:set-2(zr2012)_upregulated
      WBPaper00060811:L1_vs_adult_upregulated_neural
      WBPaper00061341:28C_24h_downregulated
      WBPaper00061341:28C_48h_downregulated
      WBPaper00061527:B0511.6_180-Y54E10BR.4_1509
      WBPaper00062193:skn-1(RNAi)_upregulated
      WBPaper00062498:PPM-1.D_interacting
      WBPaper00062554:MAGU-2_interacting
      WBPaper00062590:Aging_upregulated_coelomocyte
      WBPaper00064005:starvation_upregulated_aptf-1(gk794)_mRNA
      WBPaper00064005:starvation_upregulated_N2_mRNA
      WBPaper00064071:NHR-49_interacting
      WBPaper00064088:Day-1-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064716:paraquat_upregulated
      WBPaper00064871:hypoxia_downregulated_F3
      WBPaper00065120:body-muscle-transcriptome
      WBPaper00065149:lin-52(n771)_downregulated
      WBPaper00065373:Cisplatin_downregulated_WT
      WBPaper00065945:epidermis-rpoa-2(-)_downregulated_protein
      WBPaper00065975:P-body_vs_oocyte_depleted
      WBPaper00065975:P-body_vs_WholeAnimal_depleted
      WBPaper00065993:glp-1(e2141)_downregulated
      cgc4386_cluster_6_2
      WBPaper00024393:strongly_regulated_dauer_genes
      WBPaper00025032:cluster_7
      WBPaper00025032:cluster_107
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00031532:Larva_Pan_Neuronal_Enriched
      WBPaper00032062:age_regulated_genes
      WBPaper00032948:StarveUp3
      WBPaper00035227:heat_shock_regulated
      WBPaper00036286:Pattern_H
      WBPaper00036429:glp-1(oz112)_upregulated
      WBPaper00040603:tdp-1(lf)_up_vs_N2_FC_1.2
      WBPaper00040963:Q50_down
      WBPaper00040963:TA200_up
      WBPaper00040963:TA300_up
      WBPaper00040985:AIN-2_asynchronous_muscle
      WBPaper00041002:HF_3d_2.0mM_Down
      WBPaper00041939:control_vs_EtBr-exposed_48h
      WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
      WBPaper00041939:control_vs_UVC-EtBr-exposed_51h
      WBPaper00041939:EtBr-exposed_vs_UVC-exposed_48h
      WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h
      WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_51h
      WBPaper00042178:hlh-29(tm284)_upregulated
      WBPaper00045263:0.1mM-paraquat_downregulated
      WBPaper00045263:isp-1(qm150)_downregulated
      WBPaper00045263:nuo-6(qm200)_downregulated
      WBPaper00045263:ProLongevity-mtROS_downregulated
      WBPaper00047070:DAF-16-dependent_UV_response
      WBPaper00047070:N2_starvation_upregulated
      WBPaper00048989:eat-2(ad465)_rapamycin_downregulated
      WBPaper00048989:N2_allantoin_downregulated
      WBPaper00051448:P.aeruginosa_Slow-Killing_upregulated
      WBPaper00053688:E.faecalis_upregulated
      WBPaper00053688:E.faecium_upregulated
      WBPaper00057098:SiO2-nanoparticles_upregulated
      [cgc5767]:cluster_26
      [cgc5767]:expression_class_E
      [cgc5767]:expression_class_E_pi(53_min)
      [cgc5767]:expression_class_M
      [cgc5767]:expression_class_ME
      [cgc6390]:herm_sex-enriched
    Interaction (288)
  Map_info: Positive: Positive_clone: B0511 Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: I 5.05891
  Reference: WBPaper00029254
    WBPaper00038491
    WBPaper00042178
    WBPaper00055090
    WBPaper00064339
    WBPaper00064934
  Method: Gene