WormBase Tree Display for Gene: WBGene00011580
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| WBGene00011580 | SMap | S_parent | Sequence | CHROMOSOME_II | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | ddx-19 | Person_evidence | WBPerson555 | |||||
| WBPerson3232 | |||||||||
| Sequence_name | T07D4.4 | ||||||||
| Molecular_name (15) | |||||||||
| Other_name | CELE_T07D4.4 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | ddx-19 | ||||||||
| DB_info | Database (12) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:52 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 20 Feb 2008 16:59:39 | WBPerson2970 | Name_change | CGC_name | ddx-19 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | ddx | ||||||||
| Allele (58) | |||||||||
| Strain | WBStrain00003226 | ||||||||
| WBStrain00031624 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (15) | |||||||||
| Ortholog (48) | |||||||||
| Paralog (37) | |||||||||
| Structured_description | Concise_description | ddx-19 encodes a DEAD-box helicase; ddx-19(RNAi) in a mpk-1(ga111ts) mutant background results in germline developmental defects, including disruption of membrane organization in pachytene cells and disorganized oocytes; DDX-19 can be phosphorylated by murine ERK2 in vitro, suggesting that it is a substrate for the RTK-RAS-ERK pathway in vivo; consistent with this, DDX-19 phosphorylation is absent in mpk-1 mutant animals; DDX-19 localizes to perinuclear P granules. | Paper_evidence | WBPaper00031057 | |||||
| WBPaper00032961 | |||||||||
| WBPaper00036048 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 23 Jan 2012 00:00:00 | ||||||||
| Automated_description | Predicted to enable RNA binding activity and RNA helicase activity. Involved in germ cell development. Located in P granule. Expressed in tail. Is an ortholog of human DDX19A (DEAD-box helicase 19A) and DDX19B (DEAD-box helicase 19B). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | T07D4.4a | |||||||
| T07D4.4b | |||||||||
| T07D4.4c | |||||||||
| T07D4.4d | |||||||||
| T07D4.4e | |||||||||
| Corresponding_transcript | T07D4.4a.1 | ||||||||
| T07D4.4b.1 | |||||||||
| T07D4.4c.1 | |||||||||
| T07D4.4d.1 | |||||||||
| T07D4.4e.1 | |||||||||
| Other_sequence (50) | |||||||||
| Associated_feature (19) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00018369 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00052760 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00075465 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Chronogram2084 | ||||||||
| Expr6629 | |||||||||
| Expr9012 | |||||||||
| Expr1010235 | |||||||||
| Expr1035104 | |||||||||
| Expr1156369 | |||||||||
| Expr2010835 | |||||||||
| Expr2029073 | |||||||||
| Drives_construct | WBCnstr00003701 | ||||||||
| WBCnstr00030544 | |||||||||
| Construct_product | WBCnstr00030544 | ||||||||
| Antibody | WBAntibody00002132 | ||||||||
| Microarray_results (39) | |||||||||
| Expression_cluster (133) | |||||||||
| Interaction (113) | |||||||||
| Map_info | Map | II | Position | 0.92188 | Error | 0.002109 | |||
| Positive | Positive_clone | T07D4 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00030647 | ||||||||
| WBPaper00032961 | |||||||||
| WBPaper00036048 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
