WormBase Tree Display for Gene: WBGene00021277
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| WBGene00021277 | SMap | S_parent | Sequence | Y23H5B | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | ddx-10 | Person_evidence | WBPerson555 | |||||
| Author_evidence | Stephan Pak | ||||||||
| Sequence_name | Y23H5B.6 | ||||||||
| Molecular_name | Y23H5B.6a | ||||||||
| Y23H5B.6a.1 | |||||||||
| CE25231 | |||||||||
| Y23H5B.6b | |||||||||
| CE49821 | |||||||||
| Y23H5B.6c | |||||||||
| CE49769 | |||||||||
| Y23H5B.6b.1 | |||||||||
| Y23H5B.6c.1 | |||||||||
| Other_name | Y23H5B.c | Curator_confirmed | WBPerson1983 | ||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| Y74C10A_153.a | Curator_confirmed | WBPerson1983 | |||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| CELE_Y23H5B.6 | Accession_evidence | NDB | BX284601 | ||||||
| Public_name | ddx-10 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:04 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 03 Jan 2021 23:26:25 | WBPerson1983 | Name_change | CGC_name | ddx-10 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | ddx | ||||||||
| Allele (249) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (14) | |||||||||
| Contained_in_operon | CEOP1048 | ||||||||
| Ortholog (38) | |||||||||
| Paralog (37) | |||||||||
| Structured_description | Concise_description | Y23H5B.6 encodes a DEAD-box helicase; loss of Y23H5B.6 activity via RNAi indicates that Y23H5B.6 activity is required for positive regulation of growth rate, reproduction, and embryonic and larval development. | Paper_evidence | WBPaper00024497 | |||||
| WBPaper00024925 | |||||||||
| WBPaper00025054 | |||||||||
| WBPaper00031057 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 09 Oct 2007 00:00:00 | ||||||||
| Automated_description | Predicted to enable several functions, including ATP binding activity; ATP hydrolysis activity; and RNA helicase activity. Predicted to be involved in rRNA processing. Predicted to be located in nucleus. Is an ortholog of human DDX10 (DEAD-box helicase 10). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y23H5B.6a | |||||||
| Y23H5B.6b | |||||||||
| Y23H5B.6c | |||||||||
| Corresponding_transcript | Y23H5B.6a.1 | ||||||||
| Y23H5B.6b.1 | |||||||||
| Y23H5B.6c.1 | |||||||||
| Other_sequence (21) | |||||||||
| Associated_feature | WBsf982885 | ||||||||
| WBsf982886 | |||||||||
| WBsf982887 | |||||||||
| WBsf982888 | |||||||||
| WBsf1009347 | |||||||||
| WBsf1009348 | |||||||||
| WBsf1009349 | |||||||||
| WBsf1009350 | |||||||||
| WBsf217308 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00073343 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00061660 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00055711 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00036724 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00055710 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00073344 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00116637 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00075476 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00073345 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00102184 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1011642 | ||||||||
| Expr1039271 | |||||||||
| Expr1159234 | |||||||||
| Expr2007170 | |||||||||
| Expr2025402 | |||||||||
| Microarray_results (21) | |||||||||
| Expression_cluster (81) | |||||||||
| Interaction (199) | |||||||||
| Map_info | Map | I | Position | -8.47867 | |||||
| Positive | Positive_clone | Y23H5B | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00055090 | |||||||||
| WBPaper00064339 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
