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WormBase Tree Display for Gene: WBGene00003386

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Name Class

WBGene00003386EvidencePaper_evidenceWBPaper00004415
SMapS_parentSequenceK06C4
IdentityVersion1
NameCGC_namemod-1Person_evidenceWBPerson268
Sequence_nameK06C4.6
Molecular_nameK06C4.6a
K06C4.6a.1
CE28590
K06C4.6b
CE30814
K06C4.6c
CE38391
K06C4.6b.1
K06C4.6c.1
Other_nameCELE_K06C4.6Accession_evidenceNDBBX284605
Public_namemod-1
DB_infoDatabaseAceViewgene5J390
WormQTLgeneWBGene00003386
WormFluxgeneWBGene00003386
NDBlocus_tagCELE_K06C4.6
PanthergeneCAEEL|WormBase=WBGene00003386|UniProtKB=Q9GQ00
familyPTHR18945
NCBIgene179269
RefSeqproteinNM_001028863.5
NM_171495.6
NM_001028864.4
SwissProtUniProtAccQ9GQ00
TREEFAMTREEFAM_IDTF315490
UniProt_GCRPUniProtAccQ9GQ00
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:31WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classmod
Allele (72)
Legacy_information[Ranganathan R] modulation of locomotion defective. Resistant to effects of serotonin on locomotion.
StrainWBStrain00027365
WBStrain00055584
WBStrain00055581
WBStrain00055576
WBStrain00055575
WBStrain00055061
WBStrain00055570
WBStrain00055580
WBStrain00055579
RNASeq_FPKM (74)
GO_annotation (37)
Ortholog (29)
ParalogWBGene00000042Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00000043Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00000044Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00000045Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00000046Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00000047Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00000048Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00000049Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00000050Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00000051Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00000053Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00000054Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00000055Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00000056Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00000057Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00000058Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00000059Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00000060Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00000061Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00000062Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00000232Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00000233Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00000845Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00000951Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00000955Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00001133Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00001373Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00001512Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00001586Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00001587Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00001588Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00001591Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00001592Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00001593Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00001594Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00002974Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00002975Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00006784Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00006765Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00006774Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00006797Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00008280Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00009799Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00010275Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00010741Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00018880Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00008022Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00008551Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00008997Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00011354Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00011355Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00011356Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00011358Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00011359Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00011360Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00012857Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00013300Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00013338Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00013534Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00013655Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00013914Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00015412Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00017314Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00017375Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00017389Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00017543Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00017544Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00017580Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00019069Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00020048Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00020236Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00020767Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00021437Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00022247Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00043066Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00020836Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00022106Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00013746Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00021981Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00010994Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00007903Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00007191Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00022283Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00045385Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00007594Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00044301Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00020528Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00013517Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00021146Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00008223Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00020657Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00008076Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00009790Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00020605Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00017399Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00020569Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00012099Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00012915Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00017483Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00044528Caenorhabditis elegansFrom_analysisWormBase-Compara
Structured_descriptionConcise_descriptionmod-1 encodes a serotonin-gated chloride channel; contrary to published literature, MOD-1 activity is NOT required for the enhanced slowing response exhibited by food-deprived animals upon encountering a bacterial food source; subsequent studies have shown that mod-1 mutants (n3034, ok103, nr2043) do not exhibit reduced enhanced slowing and that the behavioral defect of the original isolate and mod-1 chloride channel mutation (n3034) are genetically separable; when expressed in voltage-clamped Xenopus oocytes, MOD-1 is able to form a serotonin-gated ion channel, and when expressed in human tissue culture cells, MOD-1 exhibits behavior consistent with chloride selectivity; a rescuing MOD-1::GFP construct is expressed in the cell bodies and axons (the latter presumably due to overexpression) of neurons in the head, tail, and ventral nerve cord.Paper_evidenceWBPaper00004415
Person_evidenceWBPerson461
Curator_confirmedWBPerson1843
Date_last_updated07 Oct 2009 00:00:00
Automated_descriptionEnables serotonin binding activity and serotonin-gated chloride channel activity. Involved in several processes, including behavioral response to starvation; locomotory exploration behavior; and positive regulation of fatty acid beta-oxidation by serotonin receptor signaling pathway. Located in neuronal cell body and plasma membrane. Expressed in body wall musculature and neurons. Used to study cocaine abuse.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Disease_infoExperimental_modelDOID:809Homo sapiensPaper_evidenceWBPaper00034643
Curator_confirmedWBPerson324
Date_last_updated28 May 2019 00:00:00
Models_disease_assertedWBDOannot00000683
Molecular_infoCorresponding_CDSK06C4.6a
K06C4.6b
K06C4.6c
Corresponding_transcriptK06C4.6a.1
K06C4.6b.1
K06C4.6c.1
Other_sequenceJI466929.1
JI169197.1
JI478000.1
JI468889.1
Associated_featureWBsf669190
WBsf1000785
WBsf1000786
WBsf1020115
WBsf1020116
WBsf234154
WBsf234155
WBsf234156
WBsf234157
Experimental_infoRNAi_resultWBRNAi00034017Inferred_automaticallyRNAi_primary
WBRNAi00050055Inferred_automaticallyRNAi_primary
Expr_pattern (11)
Drives_constructWBCnstr00007179
WBCnstr00010036
WBCnstr00015006
WBCnstr00015042
WBCnstr00015423
WBCnstr00015424
WBCnstr00018067
WBCnstr00018489
WBCnstr00020388
WBCnstr00036146
Construct_productWBCnstr00007179
WBCnstr00007180
WBCnstr00015422
WBCnstr00020388
WBCnstr00036146
Microarray_results (28)
Expression_cluster (131)
InteractionWBInteraction000001399
WBInteraction000031265
WBInteraction000166111
WBInteraction000520738
WBInteraction000525285
Map_infoMapVPosition1.72643Error0.025158
Well_ordered
PositivePositive_cloneC38E12
K06C4Inferred_automaticallyFrom sequence, transcript, pseudogene data
NegativeNegative_cloneC31A10
Mapping_dataMulti_point3874
3875
3876
3877
3878
3880
3881
3882
3883
Reference (108)
RemarkPositive clone C38E12 is based on stable transformation rescue [030407 ck1]Person_evidenceWBPerson1388
Negative clone C31A10 is based on failure to rescue [030407 ck1]Person_evidenceWBPerson1388
This mod-1 (cgc4415) is different from the mod-1 published in cgc3363, which is now dmo-1Paper_evidenceWBPaper00004415
WBPaper00003363
MethodGene