WormBase Tree Display for Gene: WBGene00021437
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| WBGene00021437 | SMap | S_parent | Sequence | Y39A3B | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | lgc-42 | Person_evidence | WBPerson2536 | |||||
| WBPerson1430 | |||||||||
| Sequence_name | Y39A3B.2 | ||||||||
| Molecular_name | Y39A3B.2a | ||||||||
| Y39A3B.2a.1 | |||||||||
| CE46491 | |||||||||
| Y39A3B.2b | |||||||||
| CE54407 | |||||||||
| Y39A3B.2b.1 | |||||||||
| Other_name | CELE_Y39A3B.2 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | lgc-42 | ||||||||
| DB_info | Database | AceView | gene | 3D91 | |||||
| WormQTL | gene | WBGene00021437 | |||||||
| WormFlux | gene | WBGene00021437 | |||||||
| NDB | locus_tag | CELE_Y39A3B.2 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00021437|UniProtKB=Q9N517 | |||||||
| family | PTHR18945 | ||||||||
| NCBI | gene | 189722 | |||||||
| RefSeq | protein | NM_001404273.1 | |||||||
| NM_065088.6 | |||||||||
| TrEMBL | UniProtAcc | A0A8S4QD70 | |||||||
| Q9N517 | |||||||||
| UniProt_GCRP | UniProtAcc | A0A8S4QD70 | |||||||
| OMIM | gene | 138491 | |||||||
| 138492 | |||||||||
| 305990 | |||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:04 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 18 Jan 2008 14:49:34 | WBPerson2970 | Name_change | CGC_name | lgc-42 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | lgc | ||||||||
| Allele (153) | |||||||||
| Strain | WBStrain00050982 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (18) | |||||||||
| Ortholog (38) | |||||||||
| Paralog (100) | |||||||||
| Structured_description | Automated_description | Predicted to enable transmitter-gated monoatomic ion channel activity involved in regulation of postsynaptic membrane potential. Predicted to contribute to chloride channel activity. Predicted to be involved in chloride transmembrane transport. Predicted to be located in neuron projection and synapse. Human ortholog(s) of this gene implicated in hyperekplexia 1; hyperekplexia 2; and syndromic X-linked intellectual disability Pilorge type. Is an ortholog of several human genes including GLRA1 (glycine receptor alpha 1); GLRA2 (glycine receptor alpha 2); and GLRB (glycine receptor beta). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0070422 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:4327) | ||||
| DOID:0060696 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:4326) | ||||||
| DOID:0060697 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:4329) | ||||||
| Molecular_info | Corresponding_CDS | Y39A3B.2a | |||||||
| Y39A3B.2b | |||||||||
| Corresponding_CDS_history | Y39A3B.2:wp104 | ||||||||
| Y39A3B.2:wp227 | |||||||||
| Corresponding_transcript | Y39A3B.2a.1 | ||||||||
| Y39A3B.2b.1 | |||||||||
| Other_sequence (24) | |||||||||
| Associated_feature | WBsf991436 | ||||||||
| WBsf991437 | |||||||||
| WBsf991438 | |||||||||
| WBsf991439 | |||||||||
| WBsf991440 | |||||||||
| WBsf1014340 | |||||||||
| WBsf1014341 | |||||||||
| WBsf1014342 | |||||||||
| WBsf1014343 | |||||||||
| WBsf1014344 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00056136 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00006992 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00036899 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1012912 | ||||||||
| Expr1159649 | |||||||||
| Expr2013121 | |||||||||
| Expr2031353 | |||||||||
| Drives_construct | WBCnstr00024553 | ||||||||
| Construct_product | WBCnstr00024553 | ||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (72) | |||||||||
| Interaction | WBInteraction000031336 | ||||||||
| WBInteraction000295740 | |||||||||
| WBInteraction000354963 | |||||||||
| WBInteraction000507941 | |||||||||
| Map_info | Map | III | Position | -15.6805 | Error | 0.005588 | |||
| Positive | Positive_clone | Y39A3B | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
