WormBase Tree Display for Gene: WBGene00000061

WBGene00000061 SMap: S_parent: Sequence: F48E3
  Identity: Version: 2
    Name: CGC_name: lgc-11 Paper_evidence: WBPaper00029376
          Person_evidence: WBPerson1430
      Sequence_name: F48E3.7
      Molecular_name: F48E3.7
        F48E3.7.1
        CE28403
      Other_name: acr-22 Person_evidence: WBPerson1430
        CELE_F48E3.7 Accession_evidence: NDB BX284606
      Public_name: lgc-11
    DB_info: Database: AceView gene XI124
        WormQTL gene WBGene00000061
        WormFlux gene WBGene00000061
        NDB locus_tag CELE_F48E3.7
        Panther gene CAEEL|WormBase=WBGene00000061|UniProtKB=G5EGR1
          family PTHR18945
        NCBI gene 181009
        RefSeq protein NM_076869.6
        TrEMBL UniProtAcc G5EGR1
        UniProt_GCRP UniProtAcc G5EGR1
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:19 WBPerson1971 Event: Imported: Initial conversion from geneace
        2 18 May 2007 16:58:23 WBPerson2970 Name_change: CGC_name: lgc-11
                Other_name: acr-22
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: lgc
    Allele (43)
    Strain: WBStrain00007565
    RNASeq_FPKM (74)
    GO_annotation (17)
    Ortholog (23)
    Paralog (100)
    Structured_description: Concise_description: lgc-11 encodes a ligand-gated ion channel of the cys-loop superfamily with sequence similarity to nicotinic acetylcholine receptor subunits, including the vertebrate neuronal acetylcholine receptor alpha-9 subunits. Paper_evidence: WBPaper00005223
            WBPaper00029376
            WBPaper00031536
          Curator_confirmed: WBPerson48
            WBPerson1843
          Date_last_updated: 15 Sep 2010 00:00:00
      Automated_description: Predicted to enable excitatory extracellular ligand-gated monoatomic ion channel activity and transmitter-gated monoatomic ion channel activity involved in regulation of postsynaptic membrane potential. Predicted to be involved in excitatory postsynaptic potential and monoatomic ion transmembrane transport. Predicted to be located in neuron projection and synapse. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F48E3.7
    Corresponding_transcript: F48E3.7.1
    Other_sequence: JO472935.1
    Associated_feature: WBsf654144
      WBsf1005858
      WBsf237584
  Experimental_info: RNAi_result: WBRNAi00015251 Inferred_automatically: RNAi_primary
      WBRNAi00076446 Inferred_automatically: RNAi_primary
      WBRNAi00047745 Inferred_automatically: RNAi_primary
      WBRNAi00066355 Inferred_automatically: RNAi_primary
      WBRNAi00102736 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1014041
      Expr1151579
      Expr2013092
      Expr2031324
    Drives_construct: WBCnstr00037762
    Construct_product: WBCnstr00037762
    Microarray_results (19)
    Expression_cluster (102)
    Interaction: WBInteraction000223011
      WBInteraction000248669
      WBInteraction000331841
      WBInteraction000444737
  Map_info: Map: X Position: -1.65958 Error: 0.007174
    Positive: Positive_clone: F48E3 Inferred_automatically: From sequence, transcript, pseudogene data
    Mapping_data: Multi_point: 4203
        4360
    Pseudo_map_position
  Reference: WBPaper00005223
    WBPaper00025245
    WBPaper00027611
    WBPaper00028761
    WBPaper00031384
    WBPaper00038491
    WBPaper00055090
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene