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WormBase Tree Display for Gene: WBGene00000061

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Name Class

WBGene00000061SMapS_parentSequenceF48E3
IdentityVersion2
NameCGC_namelgc-11Paper_evidenceWBPaper00029376
Person_evidenceWBPerson1430
Sequence_nameF48E3.7
Molecular_nameF48E3.7
F48E3.7.1
CE28403
Other_nameacr-22Person_evidenceWBPerson1430
CELE_F48E3.7Accession_evidenceNDBBX284606
Public_namelgc-11
DB_infoDatabaseAceViewgeneXI124
WormQTLgeneWBGene00000061
WormFluxgeneWBGene00000061
NDBlocus_tagCELE_F48E3.7
PanthergeneCAEEL|WormBase=WBGene00000061|UniProtKB=G5EGR1
familyPTHR18945
NCBIgene181009
RefSeqproteinNM_076869.6
TrEMBLUniProtAccG5EGR1
UniProt_GCRPUniProtAccG5EGR1
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:19WBPerson1971EventImportedInitial conversion from geneace
218 May 2007 16:58:23WBPerson2970Name_changeCGC_namelgc-11
Other_nameacr-22
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classlgc
Allele (43)
StrainWBStrain00007565
RNASeq_FPKM (74)
GO_annotation (17)
Ortholog (23)
Paralog (100)
Structured_descriptionConcise_descriptionlgc-11 encodes a ligand-gated ion channel of the cys-loop superfamily with sequence similarity to nicotinic acetylcholine receptor subunits, including the vertebrate neuronal acetylcholine receptor alpha-9 subunits.Paper_evidenceWBPaper00005223
WBPaper00029376
WBPaper00031536
Curator_confirmedWBPerson48
WBPerson1843
Date_last_updated15 Sep 2010 00:00:00
Automated_descriptionPredicted to enable excitatory extracellular ligand-gated monoatomic ion channel activity and transmitter-gated monoatomic ion channel activity involved in regulation of postsynaptic membrane potential. Predicted to be involved in excitatory postsynaptic potential and monoatomic ion transmembrane transport. Predicted to be located in neuron projection and synapse.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSF48E3.7
Corresponding_transcriptF48E3.7.1
Other_sequenceJO472935.1
Associated_featureWBsf654144
WBsf1005858
WBsf237584
Experimental_infoRNAi_resultWBRNAi00015251Inferred_automaticallyRNAi_primary
WBRNAi00076446Inferred_automaticallyRNAi_primary
WBRNAi00047745Inferred_automaticallyRNAi_primary
WBRNAi00066355Inferred_automaticallyRNAi_primary
WBRNAi00102736Inferred_automaticallyRNAi_primary
Expr_patternExpr1014041
Expr1151579
Expr2013092
Expr2031324
Drives_constructWBCnstr00037762
Construct_productWBCnstr00037762
Microarray_results (19)
Expression_clusterWBPaper00030922:glycosylated_protein
WBPaper00037950:A-class-motor-neurons_L2-larva_expressed
WBPaper00037950:all-neurons_L1-larva_expressed
WBPaper00037950:all-neurons_L2-larva_expressed
WBPaper00037950:bodywall-muscle_L2-larva_expressed
WBPaper00037950:coelomocytes_L2-larva_expressed
WBPaper00037950:excretory-cell_L2-larva_expressed
WBPaper00037950:GABAergic-motor-neurons_L2-larva_expressed
WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
WBPaper00038438:D.coniospora_12hr_downregulated_RNAseq
WBPaper00038438:E.faecalis_24hr_upregulated_RNAseq
WBPaper00038438:E.faecalis_24hr_upregulated_TilingArray
WBPaper00038438:Harposporium_24hr_upregulated_RNAseq
WBPaper00038438:P.lumniescens_24hr_upregulated_RNAseq
WBPaper00038438:P.lumniescens_24hr_upregulated_TilingArray
WBPaper00040420:ALM_PLM_enriched
WBPaper00042561:smgl-1(RNAi)_upregulated
WBPaper00044578:reduced-humidity_downregulated_microarray
WBPaper00044736:oscillating_dev_expression
WBPaper00045390:tunicamycin_downregulated
WBPaper00045420:fertilization_downregulated_transcript
WBPaper00049377:MWCNT_downregulated
WBPaper00050370:dpy-21(e428)_L3_upregulated
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
WBPaper00050488:N2_vs_mir-34(gk437)_regulated_dauer_20C
WBPaper00050726:OsmoticStress_regulated_Food
WBPaper00050726:OsmoticStress_regulated_NoFood
WBPaper00050726:starvation_regulated_LowSalt
WBPaper00050801:DAF-12_dauer_regulome
WBPaper00053308:SMG-2_associated_NMD(-)_unaltered_ClassII
WBPaper00053388:dauer_regulated_Cluster1
WBPaper00053402:cco-1(RNAi)_upregulated
WBPaper00053771:down_by_skn-1(RNAi)_at_24h-NaCl
WBPaper00053771:down_by_skn-1(RNAi)_at_dpy-7(e88)
WBPaper00055013:spt-16(RNAi)_upregulated
WBPaper00055137:S.maltophilia_downregulated
WBPaper00055354:Rapamycin-Metformin_upregulated
WBPaper00055354:Rapamycin-Psora-Allantoin_upregulated
WBPaper00055354:Rapamycin-Rifampicin-Allantoin_upregulated
WBPaper00055354:Rapamycin-Rifampicin_upregulated
WBPaper00055354:Rifampicin-Allantoin_upregulated
WBPaper00055354:Rifampicin-Psora_upregulated
WBPaper00055354:Rifampicin_upregulated
WBPaper00055386:daf-2(e1370)_upregulated
WBPaper00055386:eat-2(ad465)_upregulated
WBPaper00056090:E.faecalis_upregulated_hpx-2(dg047)
WBPaper00056167:Cry5B_upregulated
WBPaper00056471:aak-1(tm1944);aak-2(ok524)_upregulated
WBPaper00057041:unc-70(cas983)_downregulated
WBPaper00058969:RIS_depleted
WBPaper00059117:B.subtilis_upregulated
WBPaper00059739:hira-1(gk835598)_upregulated_L1
WBPaper00060014:set-2(zr2012)_downregulated
WBPaper00061340:ALA
WBPaper00061340:GLR
WBPaper00061340:I1_parent
WBPaper00061340:mc1
WBPaper00061340:mc2
WBPaper00061340:Pharyngeal_marginal_cell
WBPaper00061340:pm3_pm4_pm5
WBPaper00061340:pm8
WBPaper00061527:acy-2-F35C5.11
WBPaper00061527:xbx-3-DH11.5_20397
WBPaper00061995:mter-4(syb3662syb3403)_downregulated
WBPaper00062159:hda-2(ok1479)_upregulated
WBPaper00062325:muscle_depleted_coding-RNA
WBPaper00062347:blmp-1(tm548)_upregulated
WBPaper00062585:hlh-26(ok1453)_upregulated_E.faecium
WBPaper00064721:fasn-1(g14)_downregulated_starved
WBPaper00065096:25C_vs_20C_downregulated
WBPaper00065096:Day10_vs_Day1_downregulated
WBPaper00065096:npr-8(ok1439)_upregulated_Day10_20C
WBPaper00065749:Heat-Shock_downregulated_endu-2(tm4977)
WBPaper00065749:Heat-Shock_downregulated_N2
WBPaper00065841:24_0
WBPaper00065841:24_1
WBPaper00065841:26_1
WBPaper00065841:106_0
WBPaper00065926:pgph-2(overepxreesion)_upregulated_glucose
WBPaper00065993:glp-1(e2141)_upregulated
WBPaper00066110:Cisplatin_upregulated_diploid
WBPaper00066110:tetraploid_vs_diploid_upregulated
cgc4489_group_15
WBPaper00026929:Resveratrol_regulated_daf-16
WBPaper00034661:AgNPs_downregulated
WBPaper00041939:control_vs_EtBr-exposed_48h
WBPaper00041939:control_vs_EtBr-exposed_51h
WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
WBPaper00041939:control_vs_UVC-EtBr-exposed_51h
WBPaper00041939:UVC-EtBr-exposed_vs_EtBr-exposed_51h
WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h
WBPaper00045673:colistin_upregulated
WBPaper00045960:L1-L4-lethargus_upregulated
WBPaper00045960:L4-lethargus_upregulated
WBPaper00047070:N2_starvation_upregulated
WBPaper00047070:N2_UV_upregulated
WBPaper00048989:eat-2(ad465)_downregulated_in-DMSO
WBPaper00048989:N2_allantoin_downregulated
WBPaper00048989:N2_rapamycin_upregulated
WBPaper00056330:mrps-5(RNAi)_upregulated
WBPaper00057098:SiO2-nanoparticles_upregulated
InteractionWBInteraction000223011
WBInteraction000248669
WBInteraction000331841
WBInteraction000444737
Map_infoMapXPosition-1.65958Error0.007174
PositivePositive_cloneF48E3Inferred_automaticallyFrom sequence, transcript, pseudogene data
Mapping_dataMulti_point4203
4360
Pseudo_map_position
ReferenceWBPaper00005223
WBPaper00025245
WBPaper00027611
WBPaper00028761
WBPaper00031384
WBPaper00038491
WBPaper00055090
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene