WormBase Tree Display for Gene: WBGene00003094

WBGene00003094 SMap: S_parent: Sequence: F58B3
  Identity: Version: 1
    Name: CGC_name: lys-5 Person_evidence: WBPerson168
      Sequence_name: F58B3.2
      Molecular_name: F58B3.2
        F58B3.2.1
        CE06004
      Other_name: CELE_F58B3.2 Accession_evidence: NDB BX284604
      Public_name: lys-5
    DB_info: Database: AceView gene 4M388
        WormQTL gene WBGene00003094
        WormFlux gene WBGene00003094
        NDB locus_tag CELE_F58B3.2
        Panther gene CAEEL|WormBase=WBGene00003094|UniProtKB=Q20967
          family PTHR23208
        NCBI gene 186491
        RefSeq protein NM_069792.6
        SwissProt UniProtAcc Q20967
        TREEFAM TREEFAM_ID TF316378
        UniProt_GCRP UniProtAcc Q20967
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:30 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: lys
    Allele (12)
    RNASeq_FPKM (74)
    GO_annotation (20)
    Ortholog (48)
    Paralog: WBGene00003090 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00003091 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00003092 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00003093 Caenorhabditis elegans From_analysis: TreeFam
            Inparanoid_8
            Panther
            WormBase-Compara
      WBGene00003096 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00003099 Caenorhabditis elegans From_analysis: TreeFam
            Inparanoid_8
            Panther
            WormBase-Compara
      WBGene00003095 Caenorhabditis elegans From_analysis: TreeFam
            Inparanoid_8
            Panther
            WormBase-Compara
      WBGene00003098 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00003097 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
    Structured_description: Automated_description: Predicted to enable lysozyme activity. Involved in defense response to Gram-positive bacterium. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F58B3.2
    Corresponding_transcript: F58B3.2.1
    Other_sequence (73)
    Associated_feature: WBsf230900
  Experimental_info: RNAi_result: WBRNAi00092215 Inferred_automatically: RNAi_primary
      WBRNAi00092216 Inferred_automatically: RNAi_primary
      WBRNAi00048948 Inferred_automatically: RNAi_primary
      WBRNAi00075955 Inferred_automatically: RNAi_primary
      WBRNAi00015942 Inferred_automatically: RNAi_primary
      WBRNAi00033071 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1012348
      Expr1152685
      Expr2013316
      Expr2031547
    Drives_construct: WBCnstr00009964
      WBCnstr00036234
    Construct_product: WBCnstr00009964
      WBCnstr00036234
    Microarray_results (20)
    Expression_cluster: WBPaper00024375:Up_vhl-1_vs_hif-1_vhl-1
      WBPaper00033065:cyc-1(RNAi)_downregulated
      WBPaper00033444:BacteriaDiet_regulated
      WBPaper00036738:4uM_Heme_downregulated
      WBPaper00036738:500uM_Heme_downregulated
      WBPaper00037624:ets-4(ok165)_downregulated
      WBPaper00037950:A-class-motor-neurons_L1-larva_expressed
      WBPaper00037950:all-neurons_L1-larva_expressed
      WBPaper00037950:AVA-neuron_L1-larva_expressed
      WBPaper00037950:AVE-neuron_L1-larva_expressed
      WBPaper00037950:bodywall-muscle_L1-larva_expressed
      WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
      WBPaper00037950:coelomocytes_L1-larva_expressed
      WBPaper00037950:dopaminergic-neurons_L1-larva_expressed
      WBPaper00037950:GABAergic-motor-neurons_L1-larva_expressed
      WBPaper00037950:hypodermis_L1-larva_expressed
      WBPaper00037950:intestine_L1-larva_expressed
      WBPaper00037950:intestine_L2-larva_expressed
      WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
      WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
      WBPaper00038118:aak-2(gt33)_upregulated
      WBPaper00038168:lin-15B(n744)_downregulated
      WBPaper00038438:D.coniospora_12hr_downregulated_RNAseq
      WBPaper00038438:E.faecalis_24hr_upregulated_RNAseq
      WBPaper00038438:E.faecalis_24hr_upregulated_TilingArray
      WBPaper00038438:S.marcescens_24hr_upregulated_TilingArray
      WBPaper00040209:B.thuringiensis_downregulated_MY15
      WBPaper00040209:B.thuringiensis_downregulated_MY18
      WBPaper00040209:B.thuringiensis_downregulated_N2
      WBPaper00042561:smg-2(RNAi)_downregulated
      WBPaper00042561:smgl-1(RNAi)_downregulated
      WBPaper00044426:rotenone_24h_upregulated
      WBPaper00044578:reduced-humidity_downregulated_microarray
      WBPaper00044656:tatn-1(qd182)_downregulated
      WBPaper00044736:flat_dev_expression
      WBPaper00044760:germline_specific
      WBPaper00044857:BAR-1_upregulated
      WBPaper00045017:blmp-1(tm548)_downregulated
      WBPaper00045050:drh-3 (ne4253)_downregulated
      WBPaper00045314:S.aureus-induced_N2
      WBPaper00045390:tunicamycin_downregulated
      WBPaper00045390:ubc-9(RNAi)_upregulated
      WBPaper00045571:germline-ablation_downregulated
      WBPaper00045774:clk-1_downregulated
      WBPaper00045861:set-2(ok952)_upregulated
      WBPaper00045974:NSM_enriched_totalRNA_tiling
      WBPaper00046497:B.thuringiensis_0.1mix_downregulated_6h
      WBPaper00046497:B.thuringiensis_0.1mix_downregulated_12h
      WBPaper00046497:B.thuringiensis_0.5mix_downregulated_6h
      WBPaper00046497:B.thuringiensis_0.5mix_downregulated_12h
      WBPaper00046741:Garlic-Extract_upregulated_mRNA
      WBPaper00047131:daf-2(e1370)_downregulated_N2-background
      WBPaper00048530:fshr-1(ok778)_upregulated
      WBPaper00049498:npr-1(ur89)_regulated_6
      WBPaper00049545:jmjd-3.1(+)_upregulated
      WBPaper00049736:15deg-then-25deg(12hr)_downregulated_N2
      WBPaper00049920:Glucose-Diet_upregulated_hyl-2(tm2031)
      WBPaper00049920:hyl-2(tm2031)_downregulated
      WBPaper00049942:hsf-1(RNAi)_downregulated
      WBPaper00050080:rbr-2(tm3141)_upregulated
      WBPaper00050488:20C_vs_25C_regulated_mir-34(gk437)_adult
      WBPaper00050488:20C_vs_25C_regulated_mir-34(OverExpression)_adult
      WBPaper00050488:20C_vs_25C_regulated_N2_adult
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
      WBPaper00050488:N2_vs_mir-34(gk437)_regulated_dauer_20C
      WBPaper00050726:OsmoticStress_regulated_Food
      WBPaper00050726:OsmoticStress_regulated_NoFood
      WBPaper00050743:elli-1(sam-3)_downregulated
      WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00050990:intestine_enriched
      WBPaper00050990:intestine_expressed
      WBPaper00051404:alg-1(gk214)_downregulated
      WBPaper00053184:sma-4(rax3)_upregulated
      WBPaper00053295:lin-22(icb38)_downregulated
      WBPaper00053295:lin-22(ot267)_upregulated
      WBPaper00053295:lin-22(ot269)_upregulated
      WBPaper00053318:Aging_downregulated_mRNA_N2
      WBPaper00053318:mir-71(n4115)_downregulated_mRNA
      WBPaper00053388:dauer_regulated_Cluster5
      WBPaper00053402:his-3(RNAi)_downregulated
      WBPaper00053792:Ochrobactrum_downregulated
      WBPaper00055013:hmg-3(bar24)_downregulated
      WBPaper00055060:flr-1(RNAi)_upregulated
      WBPaper00055137:S.maltophilia_downregulated
      WBPaper00055354:eat-2(ad1116)_upregulated
      WBPaper00055354:Psora-Allantoin_downregulated
      WBPaper00055354:Rapamycin-Metformin_downregulated
      WBPaper00055354:Rapamycin-Rifampicin-Allantoin_downregulated
      WBPaper00055354:Rapamycin-Rifampicin-Psora_downregulated
      WBPaper00055354:Rifampicin-Allantoin_downregulated
      WBPaper00055386:daf-2(e1370)_downregulated
      WBPaper00055827:daf-2(e1370)_downregulated
      WBPaper00055941:atfs-1(et15)_downregulated
      WBPaper00055941:nuo-6(qm200)_downregulated
      WBPaper00055944:C.butyricum_vs_OP50_upregulated
      WBPaper00055971:nhl-2(ok818)_20C_downregulated
      WBPaper00055971:nhl-2(ok818)_25C_downregulated
      WBPaper00056090:E.faecalis_upregulated_hpx-2(dg047)
      WBPaper00056090:E.faecalis_upregulated_N2
      WBPaper00056167:ifo-1(kc2)_upregulated
      WBPaper00056169:rrf-3(pk1426)_upregulated_L2
      WBPaper00056169:rrf-3(pk1426)_upregulated_L3
      WBPaper00056290:hsp-6(mg585)_downregulated
      WBPaper00056443:DietaryRestriction_upregulated
      WBPaper00056443:sek-1(km4)_upregulated
      WBPaper00056471:aak-1(tm1944);aak-2(ok524)_downregulated
      WBPaper00056471:S.aureus-4h_downregulated_N2
      WBPaper00056550:ceh-60(ok1485)_upregulated_AdultDay4
      WBPaper00057068:ints-4(RNAi)_downregulated
      WBPaper00057158:mdt-15(tm2182)_dependent_15C_upregulated
      WBPaper00057254:MWCNT_downregulated_mRNA
      WBPaper00057265:metaformin_downregulated_OP50-MR
      WBPaper00058598:mex-3(eu149)_upregulated
      WBPaper00058598:spn-4(tm291)_upregulated
      WBPaper00058711:paraquat_downregulated
      WBPaper00058711:skn-1(lax188)_upregulated
      WBPaper00058711:wdr-5(ok1417)_downregulated
      WBPaper00058948:npr-8(ok1439)_upregulated_PA14
      WBPaper00058948:PA14_upregulated
      WBPaper00059117:B.subtilis_upregulated
      WBPaper00059604:fluvastatin_upregulated_dlk-1(km12)
      WBPaper00059604:fluvastatin_upregulated_N2
      WBPaper00059839:S.maltophilia_regulated
      WBPaper00060084:cco-1(RNAi)_downregulated_lin-40(yth27)
      WBPaper00060084:cco-1(RNAi)_downregulated_N2
      WBPaper00060358:B.thuringiensis_non-pathogen_regulated_elt-2(RNAi)
      WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
      WBPaper00060358:B.thuringiensis_pathogen_regulated_N2
      WBPaper00060445:nfki-1(cer1)_downregulated_L4
      WBPaper00060764:swsn-9(ok1354)_upregulated
      WBPaper00060811:L1_vs_adult_downregulated_neural
      WBPaper00060909:atfs-1(cmh15)_downregulated
      WBPaper00060909:atfs-1(et18)_downregulated
      WBPaper00061007:M.braciatum_downregulated
      WBPaper00061081:E.faecalis_upregulated_N2
      WBPaper00061081:E.faecalis_upregulated_skpo-1(ok1640)
      WBPaper00061424:Diet_MYb120_upregulated
      WBPaper00061439:unc-30(ok613)_upregulated_P.aeruginosa-infection
      WBPaper00061527:R10H10.3-T21H3.1
      WBPaper00061530:nhr-49(e2144)_upregulated
      WBPaper00061590:CGP37157_downregulated
      WBPaper00061753:csr-1(tor159)_downregulated_20C
      WBPaper00061753:csr-1(tor159)_upregulated_25C
      WBPaper00062056:lin-35(n745)_downregulated
      WBPaper00062078:NMR-HspB1_regulated
      WBPaper00062118:neural-HSF-1_upregulated
      WBPaper00062156:jmjd-1.2(zr1010)_upregulated
      WBPaper00062156:jmjd-5(zr1234)_upregulated
      WBPaper00062193:skn-1(RNAi)_upregulated
      WBPaper00062440:crh-1(n3315)_downregulated
      WBPaper00062446:nhr-8(hd117)_downregulated
      WBPaper00062456:doxycycline_downregulated_CB4856_protein
      WBPaper00062497:xpf-1(tm2842)_downregulated
      WBPaper00062534:fat-P-80_upregulated_ech-6(RNAi)
      WBPaper00062672:dcp-66(RNAi)_upregulated
      WBPaper00062672:let-418(n3536)dcp-66(RNAi)_upregulated
      WBPaper00062672:let-418(n3536)_upregulated
      WBPaper00064156:lipl-4(overexpress)_upregulated
      WBPaper00064539:nhr-114(gk849)_downregulated
      WBPaper00064632:daf-2(e1370)_downregulated_intestine
      WBPaper00064933:L1_secret_protein
      WBPaper00065005:sams-5(RNAi)_upregulated
      WBPaper00065096:25C_vs_20C_downregulated
      WBPaper00065096:Day10_vs_Day1_downregulated
      WBPaper00065096:npr-8(ok1439)_downregulated_Day10_20C
      WBPaper00065096:npr-8(ok1439)_downregulated_Day10_25C
      WBPaper00065158:25C_vs_15C_downregulated_WholeAnimal
      WBPaper00065288:mdt-15(tm2182)_upregulated
      WBPaper00065315:mating_upregulated_Day2-7
      WBPaper00065373:sek-1(km4)_upregulated_cisplatin
      WBPaper00065373:sek-1(km4)_upregulated_Ref
      WBPaper00065392:Lb.delbrueckii_upregulated
      WBPaper00065392:Lb.gasseri_upregulated
      WBPaper00065392:Lb.plantarum_upregulated
      WBPaper00065392:Lb.reuteri_upregulated
      WBPaper00065392:Lb.rhamnosus_upregulated
      WBPaper00065392:P.pentosaceus_upregulated
      WBPaper00065560:E.coli-HB101_downregulated_F3
      WBPaper00065734:unc-25(e156)_upregulated
      WBPaper00065746:eat-2(ad1113)_downregulated
      WBPaper00065823:pmk-1(km25)_upregulated
      WBPaper00065975:P-body_vs_WholeAnimal_depleted
      WBPaper00065984:pals-17(syb3980)_downregulated
      WBPaper00066110:Cisplatin_upregulated_diploid
      WBPaper00066110:tetraploid_vs_diploid_upregulated
      WBPaper00066118:cyclobutrifluram_downregulated
      cgc4489_group_2
      WBPaper00006465:IV_ethanol_late_repression
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00026980:intestine_enriched
      WBPaper00027111:eri-1(mg366)_upregulated
      WBPaper00028789:PA14_vs_OP50_downregulated_8hr
      WBPaper00028789:pmk-1_downregulated
      WBPaper00029437:rde-4_downregulated
      WBPaper00030985:Enterococcus_faecalis_upregulated
      WBPaper00031703:heme_responsive_6
      WBPaper00034661:AgNPs_downregulated
      WBPaper00035479:daf-16(RNAi)_upregulated
      WBPaper00035873:dpy-9_regulated
      WBPaper00035892:KIM5_vs_OP50_Down
      WBPaper00035892:Y.pestis_regulated
      WBPaper00036123:Cadmium_regulated
      WBPaper00036130:mir-243_down_regulated
      WBPaper00036286:Pattern_G
      WBPaper00036464:S.aureus-RN6390_regulated
      WBPaper00037113:CPF_16C_down-regulated
      WBPaper00037695:WC_5-day
      WBPaper00038172:tax-6null_up_regulated
      WBPaper00038231:Cry5B_1.5-fold_downregulated
      WBPaper00038231:Cry5B_2-fold_downregulated
      WBPaper00038304:octr-1_regulated
      WBPaper00038462:aging_downregulated
      WBPaper00039851:Live_C_albicans_vs_HK_OP50
      WBPaper00040210:Chlorpyrifos_16C_regulated
      WBPaper00040210:Chlorpyrifos_Diazinon_24C_regulated
      WBPaper00040603:tdp-1(lf)_up_vs_N2_FC_1.2
      WBPaper00040603:tdp-1(lf)_up_vs_N2_FC_1.5
      WBPaper00040858:eQTL_age_regulated_developing
      WBPaper00040858:eQTL_regulated_juvenile
      WBPaper00040963:Q50_up
      WBPaper00040963:TA300_up
      WBPaper00040998:nhr-66_regulated
      WBPaper00041002:HF_3d_0.2mM_Up
      WBPaper00041002:HF_3d_2.0mM_Up
      WBPaper00041002:HF_11d_0.2mM_Down
      WBPaper00041002:HF_11d_2.0mM_Up
      WBPaper00041002:HQ_3d_0.2mM_Up
      WBPaper00041002:HQ_3d_2.0mM_Up
      WBPaper00041211:RPW-24_Down
      WBPaper00041606:CE_B.thuringiensis-DB27_regulated
      WBPaper00041606:CE_S.aureus_regulated
      WBPaper00041606:CE_X.nematophila_regulated
      WBPaper00041609:hpl-1_hpl-2_downregulated
      WBPaper00041939:control_vs_EtBr-exposed_48h
      WBPaper00041939:control_vs_EtBr-exposed_51h
      WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
      WBPaper00041939:EtBr-exposed_vs_UVC-exposed_48h
      WBPaper00044091:Bpseudomallei_repressed_4h
      WBPaper00044091:Bpseudomallei_repressed_8h
      WBPaper00044091:Bpseudomallei_repressed_12h
      WBPaper00045263:0.1mM-paraquat_downregulated
      WBPaper00045263:isp-1(qm150)_downregulated
      WBPaper00045263:nuo-6(qm200)_downregulated
      WBPaper00045263:ProLongevity-mtROS_downregulated
      WBPaper00045673:colistin_upregulated
      WBPaper00046083:pmk-1(km25)_OP50_upregulated
      WBPaper00046853:AOBr_M.aeruginosa-batch-culture_downregulated
      WBPaper00048989:eat-2(ad465)_rapamycin_upregulated
      WBPaper00048989:N2_rapamycin_downregulated
      WBPaper00050515:nipi-3(fr4)_upregulated
      WBPaper00050650:mBmkTX_downregulated
      WBPaper00050767:Octopamine_induced
      WBPaper00053236:Starvation_regulated_GR1307
      WBPaper00056330:mrps-5(RNAi)_downregulated
      WBPaper00057098:SiO2-nanoparticles_downregulated
      [cgc6390]:herm_soma-enriched
    Interaction: WBInteraction000120186
      WBInteraction000120310
      WBInteraction000136314
      WBInteraction000200300
      WBInteraction000215118
      WBInteraction000266823
      WBInteraction000273232
      WBInteraction000273918
      WBInteraction000275880
      WBInteraction000279607
      WBInteraction000289493
      WBInteraction000291680
      WBInteraction000297178
      WBInteraction000301580
      WBInteraction000303143
      WBInteraction000303252
      WBInteraction000307367
      WBInteraction000309205
      WBInteraction000311102
      WBInteraction000312596
      WBInteraction000315446
      WBInteraction000320787
      WBInteraction000325625
      WBInteraction000331961
      WBInteraction000332174
      WBInteraction000332738
      WBInteraction000333242
      WBInteraction000334194
      WBInteraction000334705
      WBInteraction000335494
      WBInteraction000336083
      WBInteraction000347655
      WBInteraction000350368
      WBInteraction000354632
      WBInteraction000354899
      WBInteraction000356268
      WBInteraction000359466
      WBInteraction000360214
      WBInteraction000360258
      WBInteraction000363476
      WBInteraction000370105
      WBInteraction000370326
      WBInteraction000372173
      WBInteraction000372266
      WBInteraction000378018
      WBInteraction000378402
      WBInteraction000381056
      WBInteraction000381388
      WBInteraction000384940
      WBInteraction000384986
      WBInteraction000390920
      WBInteraction000391020
      WBInteraction000394041
      WBInteraction000397292
      WBInteraction000398711
      WBInteraction000402053
      WBInteraction000404271
      WBInteraction000405538
      WBInteraction000408172
      WBInteraction000408948
      WBInteraction000409174
      WBInteraction000409245
      WBInteraction000411589
      WBInteraction000418902
      WBInteraction000424949
      WBInteraction000426128
      WBInteraction000432738
      WBInteraction000433203
      WBInteraction000433804
      WBInteraction000437189
      WBInteraction000438997
      WBInteraction000440258
      WBInteraction000441031
      WBInteraction000441357
      WBInteraction000446193
      WBInteraction000446806
      WBInteraction000448377
      WBInteraction000453539
      WBInteraction000457052
      WBInteraction000505015
      WBInteraction000518604
      WBInteraction000518605
      WBInteraction000518663
      WBInteraction000520130
      WBInteraction000541044
      WBInteraction000541052
      WBInteraction000541056
  Map_info: Map: IV Position: 5.07846 Error: 0.003698
    Positive: Positive_clone: F58B3 Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference (13)
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene