Questions, Feedback & Help
Send us an email and we'll get back to you ASAP. Or you can read our Frequently Asked Questions.

WormBase Tree Display for Expression_cluster: WBPaper00026980:intestine_enriched

expand all nodes | collapse all nodes | view schema

Name Class

WBPaper00026980:intestine_enrichedDescriptionGenes enriched in intestine.
SpeciesCaenorhabditis elegans
AlgorithmTo identify genes that are significantly enriched by mRNA tagging, we first normalized the total amount of Cy3 and Cy5 signal to each other in each hybridization. We measured the ratio of the signals from the co-immunoprecipitated mRNA (Cy5) to total RNA in the cell extract (Cy3), and calculated the percentile rank for each gene relative to all genes in each hybridization. The mean percentile rank was determined from eight repeats of the mRNA-tagging experiment. Student's t-test was used to determine which genes showed a mean enrichment significantly greater than the median enrichment for all genes (P<0.001).
ReferenceWBPaper00026980
Microarray_results (1901)
Gene (2266)
Attribute_ofMicroarray_experimentWBPaper00026980:ges-1_IP_vs_total_RNA_1
WBPaper00026980:ges-1_IP_vs_total_RNA_2
WBPaper00026980:ges-1_IP_vs_total_RNA_3
WBPaper00026980:ges-1_IP_vs_total_RNA_4
WBPaper00026980:ges-1_IP_vs_total_RNA_5
WBPaper00026980:ges-1_IP_vs_total_RNA_6
WBPaper00026980:ges-1_IP_vs_total_RNA_7
WBPaper00026980:ges-1_IP_vs_total_RNA_8
Associated_withLife_stageWBls:0000038
Anatomy_termWBbt:0005772Enriched
mRNA_tagging
WBProcessWBbiopr:00000037
WBbiopr:00000041