WormBase Tree Display for Gene: WBGene00004228

WBGene00004228 Evidence: CGC_data_submission
  SMap: S_parent: Sequence: R09H10
  Identity (6)
  Gene_info: Biotype: SO:0001217
    Gene_class: ptr
    Allele (64)
    Strain: WBStrain00047593
    RNASeq_FPKM (74)
    GO_annotation: 00073209
      00073210
      00073211
      00073212
      00073213
      00073214
      00112518
      00112519
      00112520
    Ortholog (33)
    Paralog: WBGene00000902 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00004216 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00004217 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00004218 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00004219 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00004220 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00004221 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00004222 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00004223 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00004224 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00004225 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00004226 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00004227 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00004237 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00004233 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00004229 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00004230 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00004232 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00004231 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00004234 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00004235 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00004236 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00000493 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00003561 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00003562 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00004208 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00004210 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00004211 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00004238 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00009653 Caenorhabditis elegans From_analysis: WormBase-Compara
    Structured_description: Concise_description: ptr-14 encodes a nematode-specific member of the sterol sensing domain(SSD) proteins, distantly paralogous to Drosophila PATCHED (PTC) andhuman PTCH (OMIM:601309, mutated in basal cell nevus syndrome); PTR-14is weakly required for normal molting from L4 to adult stages; PTR-14 isalso required for normal growth to full size and locomotion. Paper_evidence: WBPaper00006465
            WBPaper00026841
            WBPaper00027263
          Curator_confirmed: WBPerson567
          Date_last_updated: 08 Nov 2006 00:00:00
      Automated_description: Predicted to enable transmembrane transporter activity. Involved in molting cycle. Predicted to be located in cytoplasmic vesicle membrane and plasma membrane. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: R09H10.4
    Corresponding_transcript: R09H10.4.1
    Other_sequence (17)
    Associated_feature (15)
  Experimental_info: RNAi_result: WBRNAi00034794 Inferred_automatically: RNAi_primary
      WBRNAi00076954 Inferred_automatically: RNAi_primary
      WBRNAi00076922 Inferred_automatically: RNAi_primary
      WBRNAi00066531 Inferred_automatically: RNAi_primary
      WBRNAi00051649 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1024743
      Expr1032080
      Expr1155320
      Expr2015157
      Expr2033395
    Drives_construct: WBCnstr00035621
    Construct_product: WBCnstr00035621
    Microarray_results (19)
    Expression_cluster (171)
    Interaction: WBInteraction000239614
      WBInteraction000279890
      WBInteraction000468494
      WBInteraction000471924
      WBInteraction000543454
  Map_info: Map: IV Position: 4.64153 Error: 0.000219
    Positive: Positive_clone: R09H10 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00004265
    WBPaper00006465
    WBPaper00026841
    WBPaper00032230
    WBPaper00038491
    WBPaper00055090
    WBPaper00064105
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene