WormBase Tree Display for Gene: WBGene00004216
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| WBGene00004216 | Evidence | CGC_data_submission | |||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | C24B5 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | ptr-1 | Person_evidence | WBPerson349 | |||||
| Sequence_name | C24B5.3 | ||||||||
| Molecular_name | C24B5.3 | ||||||||
| C24B5.3.1 | |||||||||
| CE06861 | |||||||||
| Other_name | CELE_C24B5.3 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | ptr-1 | ||||||||
| DB_info | Database | AceView | gene | 5J656 | |||||
| WormQTL | gene | WBGene00004216 | |||||||
| WormFlux | gene | WBGene00004216 | |||||||
| NDB | locus_tag | CELE_C24B5.3 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00004216|UniProtKB=Q18129 | |||||||
| family | PTHR10796 | ||||||||
| NCBI | gene | 191746 | |||||||
| RefSeq | protein | NM_072979.4 | |||||||
| TREEFAM | TREEFAM_ID | TF331806 | |||||||
| TrEMBL | UniProtAcc | Q18129 | |||||||
| UniProt_GCRP | UniProtAcc | Q18129 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:34 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | ptr | ||||||||
| Allele (44) | |||||||||
| Strain | WBStrain00047651 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00060255 | ||||||||
| 00060256 | |||||||||
| 00060257 | |||||||||
| 00060258 | |||||||||
| 00060259 | |||||||||
| 00060260 | |||||||||
| 00060261 | |||||||||
| 00112504 | |||||||||
| Ortholog (34) | |||||||||
| Paralog (30) | |||||||||
| Structured_description | Concise_description | ptr-1 encodes an ortholog of Drosophila and human PTCHD3, which definesone of seven paralogous families of sterol sensing domain (SSD)proteins; individually, PTR-1 is weakly required for normal molting fromL4 to adult stages; however, PTR-1, in conjunction with either PTR-16alone or with PTR-6 and PTR-10, is strongly required for both moltingand viability, with double ptr-1/-16 or triple ptr-1/-6/-10 RNAi animalsshowing pronounced molting defects and lethality; PTR-1 is also requiredfor normal adult alae formation, growth to full size, locomotion, andmale tail development. | Paper_evidence | WBPaper00006465 | |||||
| WBPaper00024393 | |||||||||
| WBPaper00026841 | |||||||||
| WBPaper00027263 | |||||||||
| WBPaper00028381 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 08 Nov 2006 00:00:00 | ||||||||
| Automated_description | Involved in molting cycle. Acts upstream of or within nematode male tail mating organ morphogenesis. Predicted to be located in cytoplasmic vesicle membrane and plasma membrane. Is an ortholog of human PTCHD3 (patched domain containing 3 (gene/pseudogene)). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C24B5.3 | |||||||
| Corresponding_transcript | C24B5.3.1 | ||||||||
| Other_sequence (21) | |||||||||
| Associated_feature (12) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00076909 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00041068 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00011088 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00076941 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00076933 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00077030 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00076965 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00077029 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1025404 | ||||||||
| Expr1032073 | |||||||||
| Expr1145102 | |||||||||
| Expr2015163 | |||||||||
| Expr2033401 | |||||||||
| Drives_construct | WBCnstr00035631 | ||||||||
| Construct_product | WBCnstr00035631 | ||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (209) | |||||||||
| Interaction (102) | |||||||||
| Map_info | Map | V | Position | 1.94951 | Error | 0.000146 | |||
| Positive | Positive_clone | C24B5 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00004265 | ||||||||
| WBPaper00005866 | |||||||||
| WBPaper00026841 | |||||||||
| WBPaper00033734 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00064105 | |||||||||
| WBPaper00065331 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
