WormBase Tree Display for Gene: WBGene00004229

WBGene00004229 Evidence: CGC_data_submission
  SMap: S_parent: Sequence: T07H8
  Identity: Version: 3
    Name: CGC_name: ptr-15 Person_evidence: WBPerson349
      Sequence_name: T07H8.6
      Molecular_name: T07H8.6
        T07H8.6.1
        CE18227
      Other_name: bus-13 Paper_evidence: WBPaper00051907
          Person_evidence: WBPerson261
            WBPerson349
        CELE_T07H8.6 Accession_evidence: NDB BX284605
      Public_name: ptr-15
    DB_info: Database: AceView gene 5H444
        WormQTL gene WBGene00004229
        WormFlux gene WBGene00004229
        NDB locus_tag CELE_T07H8.6
        Panther gene CAEEL|WormBase=WBGene00004229|UniProtKB=O61894
          family PTHR10796
        NCBI gene 191749
        RefSeq protein NM_072359.4
        TREEFAM TREEFAM_ID TF331806
        TrEMBL UniProtAcc O61894
        UniProt_GCRP UniProtAcc O61894
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:34 WBPerson1971 Event: Imported: Initial conversion from geneace
        2 07 Aug 2020 17:57:38 WBPerson1983 Event: Acquires_merge: WBGene00044626
        3 10 Sep 2020 13:50:48 WBPerson1983 Name_change: Other_name: bus-13
      Acquires_merge: WBGene00044626
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: ptr
    Allele (49)
    Strain: WBStrain00004738
      WBStrain00004663
      WBStrain00004742
      WBStrain00051116
    RNASeq_FPKM (74)
    GO_annotation: 00036576
      00036577
      00036578
      00036579
      00036580
      00036581
      00112521
    Ortholog (41)
    Paralog (30)
    Structured_description: Concise_description: ptr-15 encodes a nematode-specific member of the sterol sensing domain(SSD) proteins, distantly paralogous to Drosophila PATCHED (PTC) andhuman PTCH (OMIM:601309, mutated in basal cell nevus syndrome); PTR-15has no known function in vivo. Paper_evidence: WBPaper00004265
            WBPaper00026841
            WBPaper00027263
          Curator_confirmed: WBPerson48
            WBPerson567
          Date_last_updated: 08 Nov 2006 00:00:00
      Automated_description: Involved in molting cycle. Predicted to be located in cytoplasmic vesicle membrane and plasma membrane. Is an ortholog of human PTCHD3 (patched domain containing 3 (gene/pseudogene)). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: T07H8.6
    Corresponding_transcript: T07H8.6.1
    Other_sequence (34)
    Associated_feature: WBsf652745
      WBsf652746
      WBsf669100
      WBsf1000406
      WBsf1019887
      WBsf233880
  Experimental_info: RNAi_result: WBRNAi00052815 Inferred_automatically: RNAi_primary
      WBRNAi00076955 Inferred_automatically: RNAi_primary
      WBRNAi00035330 Inferred_automatically: RNAi_primary
      WBRNAi00018414 Inferred_automatically: RNAi_primary
      WBRNAi00076923 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1024252
      Expr1032081
      Expr1156416
      Expr2015158
      Expr2033396
    Drives_construct: WBCnstr00035620
    Construct_product: WBCnstr00035620
    Microarray_results (18)
    Expression_cluster (193)
    Interaction (142)
  Map_info: Map: V Position: 0.483383 Error: 0.000265
    Positive: Positive_clone: T07H8 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference (14)
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene